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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART01G32730.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
bHLH |
Protein Properties |
Length: 218aa MW: 23868 Da PI: 5.1728 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART01G32730.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 37.2 | 5.1e-12 | 42 | 91 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
h +rEr RR+r+ ++++ L+ +lP+ a +s K K +i+ A +YI++L+
OBART01G32730.1 42 RHIMRERLRRERLSQGYADLQAILPTgA---SSSKGGKNTIVAAAANYIRELE 91
599***********************88...*******************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 218 aa
Download sequence Send
to blast |
MHRFLRSIYD DAGDDAGATA EMQPAEGEQQ QAAPSGGSAR FRHIMRERLR RERLSQGYAD 60 LQAILPTGAS SSKGGKNTIV AAAANYIREL EGRKGWLCAQ NELLERTTPK PGAGMVVKVR 120 AESELGSTVD VFEAVLRRLK AMDELQVTAI QSWFGAGGMW MDVAVESKIS SREVDKAITN 180 ALKELQEIEY SEYSCLQDPM RSGTSFSCQV ESGVLLMS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003265 | 1e-158 | AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09. |
GenBank | AP014957 | 1e-158 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
GenBank | CP012609 | 1e-158 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |