 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART01G32730.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 218aa MW: 23868 Da PI: 5.1728 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART01G32730.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 37.2 | 5.1e-12 | 42 | 91 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
h +rEr RR+r+ ++++ L+ +lP+ a +s K K +i+ A +YI++L+
OBART01G32730.1 42 RHIMRERLRRERLSQGYADLQAILPTgA---SSSKGGKNTIVAAAANYIRELE 91
599***********************88...*******************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 218 aa
Download sequence Send
to blast |
MHRFLRSIYD DAGDDAGATA EMQPAEGEQQ QAAPSGGSAR FRHIMRERLR RERLSQGYAD 60
LQAILPTGAS SSKGGKNTIV AAAANYIREL EGRKGWLCAQ NELLERTTPK PGAGMVVKVR 120
AESELGSTVD VFEAVLRRLK AMDELQVTAI QSWFGAGGMW MDVAVESKIS SREVDKAITN 180
ALKELQEIEY SEYSCLQDPM RSGTSFSCQV ESGVLLMS
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003265 | 1e-158 | AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09. |
| GenBank | AP014957 | 1e-158 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012609 | 1e-158 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
