 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART01G32570.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LBD |
| Protein Properties |
Length: 245aa MW: 25726.1 Da PI: 7.886 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART01G32570.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 109.2 | 3.1e-34 | 38 | 153 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78
+C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+da+++++yeA+ar+ dPvyG+vg
OBART01G32570.1 38 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVG 131
7*********************************998555559*************************************************** PP
DUF260 79 vilklqqqleqlkaelallkee 100
+il+lq+q++ l+ +l++l+++
OBART01G32570.1 132 TILALQHQVSLLQGQLSVLESQ 153
****************999887 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MHAAQPPGSS KRRGAVERPA SGAGLQAEEA SLAGPGAPCG ACKFLRRRCV PGCVFAPHFS 60
GCGGSGVGAG VGGRGRERGA AEFAAVHRVF GASNVAKLLS RVPAALRRDA ARTVCYEAQA 120
RIADPVYGSV GTILALQHQV SLLQGQLSVL ESQLFNLRVA LASAHPDTPP QHFVVLQPAH 180
SAASTPNQVV VNYDDLPHAV DFMDAEPAAL RGLESLQLSQ PLQREEDEGH RDMNLFSDSV 240
GQRQL
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK242468 | 0.0 | AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence. |
