PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G31910.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 314aa    MW: 32481.4 Da    PI: 8.3519
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G31910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.21.6e-30551653112
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......k 89 
                      g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ +        ++++++ +       +
  OBART01G31910.1  55 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDHL------CMGHHHHLPsamplmhH 142
                      78***************************************************************999444......34444444411112212 PP

              TCP  90 aaksaakskksqksaasalnlak 112
                      +   ++   ++ + aa+a +la+
  OBART01G31910.1 143 HGHHHHADDDKYHVAAAAAALAA 165
                      22222222233333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.95156114IPR017887Transcription factor TCP subgroup
PfamPF036344.6E-2756118IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MILGSNQAAA AAAAAAAAEE EAAELARKHT AAVATSRQWS AQTESRIVRV SRVFGGKDRH  60
SKVKTVKGLR DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQFP  120
PQDHLCMGHH HHLPSAMPLM HHHGHHHHAD DDKYHVAAAA AALAAEKEAA AAGGGGGGGG  180
DDVDGGGGGG AAHIVGRFPA GGYHRFMGLN NPLGMVNSAA GAAMPFHYAG GGGGGDDAAA  240
GILKWSSADR PSSPLPLKCA RNSPAGSPQV AAAAAHHSSP FPSLLSLAPG PHHQLVFYSS  300
EAEQFTLGSS QVSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2061115155Putative transcription factor PCF6
5zkt_B4e-2061115155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0719640.0AK071964.1 Oryza sativa Japonica Group cDNA clone:J013079O19, full insert sequence.
GenBankAP0032740.0AP003274.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0512C01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626531.11e-142transcription factor PCF6-like
RefseqXP_015626542.11e-142transcription factor PCF6-like
TrEMBLA0A0D3EUC00.0A0A0D3EUC0_9ORYZ; Uncharacterized protein
STRINGOBART01G31910.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-40plastid transcription factor 1