PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G30930.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 316aa    MW: 34257.6 Da    PI: 4.5569
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G30930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.5e-3098156259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+
  OBART01G30930.1  98 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSFEHNHP 156
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-3195158IPR003657WRKY domain
SuperFamilySSF1182904.71E-2696158IPR003657WRKY domain
SMARTSM007742.9E-3697157IPR003657WRKY domain
PROSITE profilePS5081131.86998158IPR003657WRKY domain
PfamPF031063.2E-2699156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAAGEEVMDR STSAEDGYCS AGTDSPRAES VDEQGAAEES SPRGGQKREL PSPSASPSSP  60
LPPAAKRSRR SVEKRVVSVP IAECGDRPKG AGEGPPPSDS WAWRKYGQKP IKGSPYPRGY  120
YRCSSSKGCP ARKQVERSRA DPTVLLVTYS FEHNHPWPQP KSSSCHASKS SPRSTAPKPE  180
PAADGQQPEP AENESSASAE LEVPEPEPEQ ESEPVVKQEE EQKEEQKAVV EPAAVTTTVA  240
PAPAVEEEDE NFDFGWIDQY HPTWHRSYAP LLPPEEWERE LQGDDALFAG LGELPECAVV  300
FGRRRELGLA ATAPCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-2074158679Disease resistance protein RRS1
5w3x_D6e-2074158679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8415830.0CT841583.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103H04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647591.10.0probable WRKY transcription factor 65
TrEMBLA0A0D3EU110.0A0A0D3EU11_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YEZ90.0A0A0D9YEZ9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FT570.0A0A0E0FT57_ORYNI; Uncharacterized protein
TrEMBLA2WV310.0A2WV31_ORYSI; Defense-responsive protein WRKY13
TrEMBLI1NRP70.0I1NRP7_ORYGL; Uncharacterized protein
STRINGONIVA01G35310.10.0(Oryza nivara)
STRINGORGLA01G0253700.10.0(Oryza glaberrima)
STRINGOBART01G30930.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-38WRKY DNA-binding protein 65