PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G28650.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 481aa MW: 52792 Da PI: 10.9637 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.7 | 5.9e-13 | 365 | 400 | 2 | 42 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeA 42 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f t +A OBART01G28650.7 365 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFAT-AGA 400 7********.**********64....55*********9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10250 | 6.4E-20 | 89 | 206 | IPR019378 | GDP-fucose protein O-fucosyltransferase |
PROSITE profile | PS51032 | 15.975 | 365 | 402 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-7 | 365 | 400 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-9 | 365 | 414 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-10 | 365 | 400 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-17 | 365 | 402 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-8 | 366 | 377 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-8 | 388 | 404 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MSSSASAAAW WARSRVRILL PVIFLAPALY FLLSPPSSPP FFFTLPTSRE VSPSASGSRV 60 IWAQRRVAEW RPCGWWRAAM PAPSRRNGYI RIDCYGGLNQ LRRDLCDGIA VARLLNATMV 120 LPKFEVAAYW NESSGFADVF DVDYFIEQTR GYVEVVKDMP EEIASKEPFK VDCSKRKGHF 180 DYVETVLPAL LEHQYISLTP AMSQRRDSAI EAARGEDRKA LTAIKGTRVD RLREASDTGH 240 HRGRHKRARS SPPRHDDEPP PPPPLSPVVT GGAHGGAGGA EWHSTVLAED VESAVIVAAL 300 THVISSTAAE VTTAVPPVTV APQRAATATM FGQQVMQQPP RGFPPLPSSS GSAATAPEQQ 360 QPRRRYRGVR QRPWGKWAAE IRDPVKAARV WLGTFATAGA GASEATLQPR RRPEHHTGAR 420 SRRRCRSAAG GVPRPQQLRA HTAERRPGVR LPRRGFCRTN DDSWAVVVVV VIVDAAAIRG 480 S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY341827 | 0.0 | AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660332.1 | 0.0 | PREDICTED: uncharacterized protein LOC102713488 | ||||
TrEMBL | A0A0D3ET91 | 0.0 | A0A0D3ET91_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G28650.7 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7364 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 2e-10 | ERF family protein |