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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G25820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WOX | ||||||||
Protein Properties | Length: 619aa MW: 63173.8 Da PI: 8.482 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.7 | 1.4e-16 | 67 | 127 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e+ ++ ++l ++ +++V++WFqNr+ + k+ OBART01G25820.1 67 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMQLqdygQVGDANVFYWFQNRKSRSKN 127 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 109.1 | 2.5e-35 | 66 | 128 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L+ yG+++d+NVfyWFQNrk+R+++k OBART01G25820.1 66 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQDYGQVGDANVFYWFQNRKSRSKNK 128 579**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.896 | 63 | 128 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.13E-11 | 65 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.2E-5 | 65 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.64E-6 | 66 | 128 | No hit | No description |
Pfam | PF00046 | 3.1E-14 | 67 | 126 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-6 | 67 | 127 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGYSL KSSPFSSVGE 60 ERVPDPKPRW NPRPEQIRIL EAIFNSGMVN PPRDEIPRIR MQLQDYGQVG DANVFYWFQN 120 RKSRSKNKLR SGGTGRAGLG LGGNRASAPA AAATAHREAV APSFTLPPIL PPQPVQPQQQ 180 LVSPVAAPTS LSSSSSDRSS GSSKPARATS TQAMSLRSGG TGRAGLGLGG NRASAPAAAH 240 REAVAPSFTP PPPILPAPQP VQPQQQLVSP VAAPTSSSSS SSDRSSGSSK PARATSTQAM 300 SVTTAMDLLS PLAAACHQQM LYQGQPLESP PAPAPKVHGI VPHDEPVFLQ WPQSPCLSAV 360 DLGAAILGGQ YMHLPVPAPQ PPSSPGAAGM FWGLCNDVQA PNNTGHKSCA WSAGLGQHWC 420 GSADQLGLGK SSAASIATVS RPEEAHDVDA TKHSLLQYGF GITTPAVHVD VTSSAAGVLP 480 PVPSSPSPPN AAVTVASVAA TASLTDFAAS AISAGAVANN QFQGLADFGL VAGACSGAGA 540 AAAGAPEAGS SVAAVVCVSV AGAAPPLFYP AAHFNVRHYG DEAELLRYRG GSRTEPVPVD 600 ESGVTVEPLQ QGAVYIVVM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025875666.1 | 0.0 | WUSCHEL-related homeobox 7 | ||||
Swissprot | Q0JKK6 | 0.0 | WOX7_ORYSJ; WUSCHEL-related homeobox 7 | ||||
TrEMBL | A0A0D3ES87 | 0.0 | A0A0D3ES87_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G25820.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 3e-43 | homeobox-3 |