 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART01G24420.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C3H |
| Protein Properties |
Length: 333aa MW: 36086.5 Da PI: 7.9986 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART01G24420.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 48.3 | 1.7e-15 | 259 | 284 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+ktelC+ + +tG C+yGd+C+FaHg
OBART01G24420.1 259 FKTELCNKWEETGDCPYGDQCQFAHG 284
79***********************9 PP
|
| 2 | zf-CCCH | 18.9 | 2.7e-06 | 297 | 322 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+ Cr +++ C+yG rC+F H+
OBART01G24420.1 297 YKTAVCRMVLAGDVCPYGHRCHFRHS 322
9**********55**********998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0051511 | Biological Process | negative regulation of unidimensional cell growth |
| GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis |
| GO:0003729 | Molecular Function | mRNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MQEALVSPVR STLELKPFNF GDQRLASSPR YLPSGDDALY RCSSPFSPSF GFSSPSPLAT 60
SVSLSPSSSA SLVDDGDDGG AAADATGQRL QLARLALQYQ EVADRYELCL SHLAEAAEEA 120
AALRLENAEL RVTNSDLALR LALLSGKHTA AVAVADEIRR LRLGEQKVAA ATKERTPEKL 180
AVLPKSISVR STSYLKLNQQ SQAATATSAA PNRKPRTSSN PTNPPNSQRA YDGGKKGDEQ 240
KAQPADSGAE LEVYNQGMFK TELCNKWEET GDCPYGDQCQ FAHGVAELRP VIRHPRYKTA 300
VCRMVLAGDV CPYGHRCHFR HSLTPAERLL LRS
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK108658 | 0.0 | AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence. |
