PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G23860.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 93aa    MW: 10138 Da    PI: 8.9446
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G23860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-091965346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT++  +++ +a + + ++   +W+ +ar+mg  +++++++ ++  
  OBART01G23860.1 19 EWTKQQNKQFERALAVYDTDapdRWHNVARYMGGAKSAEEVRRHYER 65
                     7********************************999********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6781571IPR017884SANT domain
SMARTSM007179.1E-71669IPR001005SANT/Myb domain
SuperFamilySSF466894.1E-111872IPR009057Homeodomain-like
CDDcd001672.43E-71966No hitNo description
Gene3DG3DSA:1.10.10.609.8E-51973IPR009057Homeodomain-like
PfamPF002492.6E-71966IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MASSSKASSS SSASAASSEW TKQQNKQFER ALAVYDTDAP DRWHNVARYM GGAKSAEEVR  60
RHYERLQADV EQIEAGGVPF SLGYGATPQA GRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-201180270RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043171e-156AP004317.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0663E10.
GenBankAP0072511e-156AP007251.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, fosmid clone:OSJNOa234E14.
GenBankAP0149571e-156AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-156CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638756.12e-62protein RADIALIS-like 3
SwissprotQ1A1735e-24RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0D3ERL84e-61A0A0D3ERL8_9ORYZ; Uncharacterized protein
TrEMBLA0A0P0V5P46e-61A0A0P0V5P4_ORYSJ; Os01g0635000 protein (Fragment)
TrEMBLA2WSZ14e-61A2WSZ1_ORYSI; Uncharacterized protein
TrEMBLQ8RYM54e-61Q8RYM5_ORYSJ; Uncharacterized protein
STRINGOS01T0635000-009e-62(Oryza sativa)
STRINGOBART01G23860.16e-62(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-24RAD-like 6