PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G22750.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 441aa    MW: 48097.6 Da    PI: 7.8745
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G22750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345.1e-11107132227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C f++ t tCk+G++CkF H++
  OBART01G22750.1 107 GEKDCAFYMMTRTCKFGGSCKFDHPQ 132
                      7889********************97 PP
2zf-CCCH40.64.2e-13157182227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+ff++tG Ck+G++CkF+H++
  OBART01G22750.1 157 GEPDCPFFMKTGKCKFGSKCKFNHPK 182
                      789*********************96 PP
3zf-CCCH21.15.6e-07196215827
                      GGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                      f+a+tG Ck+ + CkF+H++
  OBART01G22750.1 196 FYAKTGKCKFRAMCKFNHPK 215
                      9*****************96 PP
4zf-CCCH39.97e-13268293126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C+f++++G Ck+G++C+F+H+
  OBART01G22750.1 268 PGEVDCPFYMKMGSCKFGSTCRFNHP 293
                      57899********************9 PP
5zf-CCCH36.21e-11351372526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+f+++tG+Ck+ drCkF+H+
  OBART01G22750.1 351 VCDFYMKTGFCKFADRCKFHHP 372
                      7********************8 PP
6zf-CCCH33.95.3e-11406428527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C f+++tG Ck+G +CkF H+p
  OBART01G22750.1 406 VCAFYMKTGVCKFGMQCKFDHPP 428
                      7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0038105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.615105133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5106132IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8107132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258155183IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6155182IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10157182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6160186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5161182IPR000571Zinc finger, CCCH-type
SMARTSM003561.2192215IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.643196216IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601267295IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10269293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5271294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4273292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-7345374IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7346373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859346374IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8350372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-6351372IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5401428IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408401429IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6404429IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8405428IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4406426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR  60
SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC  120
KFGGSCKFDH PQWVPEGGIP NWKEAANVEE SYPEQQGEPD CPFFMKTGKC KFGSKCKFNH  180
PKEKVNALAS GKTNDFYAKT GKCKFRAMCK FNHPKDIEIP SSQNEPKSAV TVEGETDIGS  240
AADSVSAKMQ TPVAAAQEFN SKGLPMRPGE VDCPFYMKMG SCKFGSTCRF NHPDRLVLNF  300
PLPLGQTILP TPESMLLNSS ANFMQGFDFH AAHMPVGPGP VTYPQRPGAT VCDFYMKTGF  360
CKFADRCKFH HPIDRSAPDP SANWEPAEES VQLTLAGLPR REDAVVCAFY MKTGVCKFGM  420
QCKFDHPPPQ EAIAKVSNSG S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116820.0AK111682.1 Oryza sativa Japonica Group cDNA clone:J013159G03, full insert sequence.
GenBankAK1121160.0AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622283.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0D3ER910.0A0A0D3ER91_9ORYZ; Uncharacterized protein
STRINGOBART01G22750.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-134floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]