PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OBART01G20240.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 58aa MW: 6221.02 Da PI: 6.5102

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G20240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	39.8	1.3e-12	1	43	58	100
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m+s+v+ ++ara dPv+Ga+gvi++lqq+l+++kae+a+++++ OBART01G20240.1 1 MASIVFVSDARAADPVHGAYGVIRNLQQELASVKAEIAAIRQK 43 89************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.0E-8	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 58 aa Download sequence Send to blast
MASIVFVSDA RAADPVHGAY GVIRNLQQEL ASVKAEIAAI RQKQQQAQQP PPALEDGH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	3e-91	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878934.1	4e-23	LOB domain-containing protein 22-like
TrEMBL	A0A0D3EQE1	5e-33	A0A0D3EQE1_9ORYZ; Uncharacterized protein
TrEMBL	I1NP84	4e-32	I1NP84_ORYGL; Uncharacterized protein
STRING	ORGLA01G0167400.1	7e-33	(Oryza glaberrima)
STRING	OBART01G20240.1	9e-34	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15375	11	18