 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART01G20080.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LBD |
| Protein Properties |
Length: 353aa MW: 38193.9 Da PI: 4.5956 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART01G20080.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 102.8 | 3e-32 | 22 | 121 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93
+CaaCk+lrr+C+++ C lap+fpa+qp++++ v+++FG+++vl+l +++ +e +d++ss+vyeAea+ rdPv G +gv+ +l+ ++ +++ae
OBART01G20080.1 22 RCAACKFLRRACSPEeCRLAPHFPASQPERLQSVERVFGMRKVLELAHKAGPEYLDDILSSIVYEAEAWGRDPVWGPTGVVGALELEIGTARAE 115
6***********9877****************************************************************************** PP
DUF260 94 lallke 99
la+l+
OBART01G20080.1 116 LAVLQG 121
*99886 PP
|
| 2 | DUF260 | 112.4 | 3.1e-35 | 171 | 262 | 1 | 91 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaC++l r+C ++C lapyfpa q p++f nvh+lF+ +nvl++++++++eer+d+m+++vyeA+a+ardP yG++gv+++l+++l++++
OBART01G20080.1 171 RCAACRYLSRSCWPECLLAPYFPAGQpPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAAIVYEADAWARDPRYGVAGVVRSLTNELARVR 262
6***********************9978************************************************************9886 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MADPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVERVFG 60
MRKVLELAHK AGPEYLDDIL SSIVYEAEAW GRDPVWGPTG VVGALELEIG TARAELAVLQ 120
GQDQDQPPAV ATLPEPELVV HPPTMAQDES KPSSTTSSSS GTTTTKKNKP RCAACRYLSR 180
SCWPECLLAP YFPAGQPPAQ FGNVHRLFRL NNVLRMMEET RREERDDLMA AIVYEADAWA 240
RDPRYGVAGV VRSLTNELAR VRLDEIAFHL LGTDETYDGY KEEDALAVDP VSGAQAGIGV 300
LGGSGADLQE NTGILLGADE PGPGELAVDP IKDVFDIDRL LAVDDDLSSG TQP
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003308 | 0.0 | AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05. |
| GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
