 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART01G17510.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LBD |
| Protein Properties |
Length: 332aa MW: 35559.3 Da PI: 5.6966 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART01G17510.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 98.8 | 5.5e-31 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+q +q
OBART01G17510.1 4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGQWQACQ 97
6********************************************************************************************* PP
DUF260 90 lkaelallk 98
+++e++l +
OBART01G17510.1 98 AAVEAVLKG 106
***998765 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAGPDH 60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GQWQACQAAV EAVLKGDPVV QVSSEAAAAA 120
QATPPLRAYD IRHVAKDAEA DAAANLLRVA RGGRTRFKRA SSSSNSKHGA KLAGAAAAKR 180
AASPSSSSPT HETEPEAVVV VGDHDDDHHH PALSHEAHEE ESAGSHDHDD DDHVDDGDNN 240
DMAIADVTPP RAGSEDTEVE TGSHVSQAEQ SPVPVEHEEG EEEEEVGLEL TLGFQPLVVR 300
ASRRPASAEA RCDLSGSSCQ REKRRREPRA FF
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CT832350 | 0.0 | CT832350.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN025N11, full insert sequence. |
