PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G14190.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 568aa    MW: 60937.2 Da    PI: 4.7288
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G14190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.32e-25361721127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgk 88 
                      +p+G+ F P+d el    L+ k+ +++    l++++++++i++++P  L+ + + +ee+  +yfFs+r+ +++  +++r++r++k g+Wka+g+
  OBART01G14190.1  36 MPVGCYFVPKDLELFAI-LRCKLVRSQlpGALNNIFEHIRILEFHPALLHeTYIGNEEDgYIYFFSRRQFATKarNKRRPTRVAKGGTWKASGR 128
                      699************66.666655555233334568999**********8445555555356999999855443389999**9*********** PP

              NAM  89 dkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      +k++ sk  +g +vg k t+vfy    + ++++ kt+W mhe++
  OBART01G14190.1 129 SKTLRSKkvGGIDVGQKLTMVFYerrFEGDQNPIKTNWGMHEFT 172
                      *****99888899**********43313456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3230196IPR003441NAC domain
PROSITE profilePS5100530.52536193IPR003441NAC domain
PfamPF023651.6E-1337172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MAEQPLGGGG GDGNNNGKWK GKEKVVPEYG KNRHGMPVGC YFVPKDLELF AILRCKLVRS  60
QLPGALNNIF EHIRILEFHP ALLHETYIGN EEDGYIYFFS RRQFATKARN KRRPTRVAKG  120
GTWKASGRSK TLRSKKVGGI DVGQKLTMVF YERRFEGDQN PIKTNWGMHE FTKIIDGSKN  180
QLEDLAVYRL YKIKRKEDEE PVNAAAAASS TDEPSTSSAL PPPTPPRPLP DMAGPSSATP  240
LLPLQLPDMA GPSSSTPLLP LQLLGLAGSS SAMSLPLPLQ LPGLAGSSSA MSLPAQQMPG  300
MAGSSSAMPL PLSLPGLAGG MMSMADQANM ASTSQASTPS SELLQDWYDE FEITYGAVAP  360
PSPSTISWEA PQSSPTGWWP SPNGEPVQHD GYLGMAANPT SYMLEHPLPT VAIPPEPMTP  420
PTSSPAPPPA VDNHHRLSPP HDAAGSNYNH PELSGYNGGV QAQHEHQHQP QEPQPALLVD  480
GEDSYGARAD GDGDTQLGVA ELDTERIAEM VNHIMDGEFE FKFEDNTVLK YNEVFPDDDK  540
VVAAPMMIDG GGDGDGADGG DGGDPFDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.10.0NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0D3END40.0A0A0D3END4_9ORYZ; Uncharacterized protein
STRINGOBART01G14190.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.14e-13NAC family protein