PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 704aa MW: 77854.1 Da PI: 8.5212

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G12270.5	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118.8	2.6e-37	106	183	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+++ls+a++y++rhkvCevh+k+ vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLa+hn+rrrk q OBART01G12270.5 106 CCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKSCRSRLAQHNRRRRKVQV 183 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.3E-28	101	168	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.248	104	181	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.84E-35	105	185	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-28	107	180	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.25E-5	436	584	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.6E-4	447	583	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.38E-4	517	582	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRVS 60 PEDDDGEECI NAATTNGDDG QISGQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVNLSSAR 120 DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFHFLQEF DEGKKSCRSR LAQHNRRRRK 180 VQVQAASGPS EQINGPNYLT NLVKNLAALA GTQRNQDMLK NANSAAIASH TGNYVAKGNS 240 LHDSRPHIPV GTESTAEEPT VERRVQNFDL NDAYVEGDEN RTDKIVFKLF GKEPNDFPSD 300 LRAQLAADPA HWIQKLISLS TDTLWRTGWM YARVQDYLTL SCNGNLMLAS PWQPAIGNKH 360 QILFITPIAV ACSSTANFSV KGLNIAQPTT KLKIMIKAAF HFPLLLLKKM SHIRATSETP 420 KDCTEGFPAA RFRWLLSFAV DREFCAVIKK LLDTLFQGGV DLDVQSTVEF VLKQDLVFVA 480 VNKRSKPLID FLLTYTTSSA PMDGTESAAP AQFLFTPDIA GPSDITPLHI AATYSDTAGV 540 LDALTDDPQQ LGTKAWKNAR DATGLTPEDY ARKRGHESYI EMVQNKIDSR LPKAHVSVTI 600 SSTTSTTDFT EKHASQSKTT DQTAFDVEKG QQISTKPPLS CRQCLPELAY RHHLNRFLST 660 RPAVLSLVAI AAVCVCVGLI MQGPPHIGGM RGPFRWNSLR SGPK

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRVS  60
PEDDDGEECI NAATTNGDDG QISGQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVNLSSAR  120
DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFHFLQEF DEGKKSCRSR LAQHNRRRRK  180
VQVQAASGPS EQINGPNYLT NLVKNLAALA GTQRNQDMLK NANSAAIASH TGNYVAKGNS  240
LHDSRPHIPV GTESTAEEPT VERRVQNFDL NDAYVEGDEN RTDKIVFKLF GKEPNDFPSD  300
LRAQLAADPA HWIQKLISLS TDTLWRTGWM YARVQDYLTL SCNGNLMLAS PWQPAIGNKH  360
QILFITPIAV ACSSTANFSV KGLNIAQPTT KLKIMIKAAF HFPLLLLKKM SHIRATSETP  420
KDCTEGFPAA RFRWLLSFAV DREFCAVIKK LLDTLFQGGV DLDVQSTVEF VLKQDLVFVA  480
VNKRSKPLID FLLTYTTSSA PMDGTESAAP AQFLFTPDIA GPSDITPLHI AATYSDTAGV  540
LDALTDDPQQ LGTKAWKNAR DATGLTPEDY ARKRGHESYI EMVQNKIDSR LPKAHVSVTI  600
SSTTSTTDFT EKHASQSKTT DQTAFDVEKG QQISTKPPLS CRQCLPELAY RHHLNRFLST  660
RPAVLSLVAI AAVCVCVGLI MQGPPHIGGM RGPFRWNSLR SGPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-25	98	180	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	58	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068471	0.0	AK068471.1 Oryza sativa Japonica Group cDNA clone:J013155F18, full insert sequence.
GenBank	AK072849	0.0	AK072849.1 Oryza sativa Japonica Group cDNA clone:J023142C13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614279.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_015614292.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Refseq	XP_015614297.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Refseq	XP_025880633.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0D3EMS9	0.0	A0A0D3EMS9_9ORYZ; Uncharacterized protein
STRING	BRADI2G11240.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	7e-63	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]