PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G12270.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 862aa    MW: 95858.3 Da    PI: 6.987
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G12270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP118.53.4e-37106183178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv+gC+++ls+a++y++rhkvCevh+k+ vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLa+hn+rrrk q 
  OBART01G12270.1 106 CCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKSCRSRLAQHNRRRRKVQV 183
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.7E-28101168IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.248104181IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-34105184IPR004333Transcription factor, SBP-box
PfamPF031101.4E-28107180IPR004333Transcription factor, SBP-box
SuperFamilySSF484034.4E-5594742IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.7E-4606741IPR020683Ankyrin repeat-containing domain
CDDcd002041.73E-4675740No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRVS  60
PEDDDGEECI NAATTNGDDG QISGQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVNLSSAR  120
DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFHFLQEF DEGKKSCRSR LAQHNRRRRK  180
VQVQAGVDVN SLHENHSLSN TLLLLLKQLS GLDSSGPSEQ INGPNYLTNL VKNLAALAGT  240
QRNQDMLKNA NSAAIASHTG NYVAKGNSLH DSRPHIPVGT ESTAEEPTVE RRVQNFDLND  300
AYVEGDENRT DKIVFKLFGK EPNDFPSDLR AQILSWLSNC PSDIESYIRP GCIILTIYMR  360
LPNWMWDKLA ADPAHWIQKL ISLSTDTLWR TGWMYARVQD YLTLSCNGNL MLASPWQPAI  420
GNKHQILFIT PIAVACSSTA NFSVKGLNIA QPTTKLLCIF GGKYLIQEAT EKLLDDTKMQ  480
RGPQCLTFSC SFPSTSGRGF IEVEDHDQSS LSFPFVVAEE DVCSEIRTLE HLLNLVSFDD  540
TLVEKNDLLA SRDRALNFLH EFGWFLQRSH IRATSETPKD CTEGFPAARF RWLLSFAVDR  600
EFCAVIKKLL DTLFQGGVDL DVQSTVEFVL KQDLVFVAVN KRSKPLIDFL LTYTTSSAPM  660
DGTESAAPAQ FLFTPDIAGP SDITPLHIAA TYSDTAGVLD ALTDDPQQLG TKAWKNARDA  720
TGLTPEDYAR KRGHESYIEM VQNKIDSRLP KAHVSVTISS TTSTTDFTEK HASQSKTTDQ  780
TAFDVEKGQQ ISTKPPLSCR QCLPELAYRH HLNRFLSTRP AVLSLVAIAA VCVCVGLIMQ  840
GPPHIGGMRG PFRWNSLRSG PK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-2598180184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0684710.0AK068471.1 Oryza sativa Japonica Group cDNA clone:J013155F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614292.10.0squamosa promoter-binding-like protein 1 isoform X3
RefseqXP_015614297.10.0squamosa promoter-binding-like protein 1 isoform X3
RefseqXP_025880633.10.0squamosa promoter-binding-like protein 1 isoform X3
SwissprotQ9LGU70.0SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBLA0A0D3EMS00.0A0A0D3EMS0_9ORYZ; Uncharacterized protein
TrEMBLI1NME50.0I1NME5_ORYGL; Uncharacterized protein
STRINGORGLA01G0103500.10.0(Oryza glaberrima)
STRINGOBART01G12250.20.0(Oryza barthii)
STRINGOBART01G12270.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang H,Zhai J,Mo J,Li D,Song F
    Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance.
    J Integr Plant Biol, 2012. 54(9): p. 652-62
    [PMID:22889013]
  3. Zhang H, et al.
    Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
    Plant Cell Rep., 2014. 33(10): p. 1745-56
    [PMID:25113543]