PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G12050.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 306aa    MW: 33280.1 Da    PI: 6.6762
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G12050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.81.4e-181050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ri n+  r  tf kRr g+ KKA+ELS+LCd++++++++++
  OBART01G12050.1 10 RIANDATRRATFKKRRRGLVKKASELSTLCDVDACLVVYGE 50
                     899************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.119150IPR002100Transcription factor, MADS-box
CDDcd002661.40E-34285No hitNo description
SuperFamilySSF554558.89E-25392IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-12323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-181050IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MARKKIVLDR IANDATRRAT FKKRRRGLVK KASELSTLCD VDACLVVYGE GDAEPEVWPS  60
TEVAMNVLRQ FRALPEMEQC KKMMNQEDFL RLRIGKLKEQ LRKMDRDNHE RETLILLHDA  120
LQGRLGTYES LSVEQLTSVD CLASARLKVI TDRLVEIRAP NEDGQVLVPP PPPPPPALPA  180
PPPPPAPILP LAPPPTHVTP AMPLSSMPPP AFHGMNHHHH QNHFINHGGN DQNAWLMNVA  240
RNGGDLGALV YSAFASSSSS NTGGAGTSAA GAAAPGPDMM DLANPDMPGF GWPWDDDSAG  300
PSFPPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIVLDRIANDATRRATFKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878343.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A0D3EMP80.0A0A0D3EMP8_9ORYZ; Uncharacterized protein
TrEMBLI1NMC70.0I1NMC7_ORYGL; Uncharacterized protein
STRINGORGLA01G0101700.10.0(Oryza glaberrima)
STRINGOBART01G12050.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-26AGAMOUS-like 80