PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OBART01G07010.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 308aa MW: 35540.7 Da PI: 7.8218

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G07010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.4	9e-15	146	194	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+eEd l ++ + +G ++W+++a++m+ +R++kqc++rw+++l OBART01G07010.1 146 AWTPEEDACLERLARGYGFRHWRRVAEEMQpreRRRSPKQCRDRWRDHL 194 8*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.194	139	198	IPR017930	Myb domain
SMART	SM00717	6.4E-12	143	196	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-16	146	204	IPR009057	Homeodomain-like
CDD	cd00167	8.71E-12	146	194	No hit	No description
SuperFamily	SSF46689	1.45E-17	146	218	IPR009057	Homeodomain-like
Pfam	PF00249	4.2E-14	146	194	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.144	195	247	IPR017877	Myb-like domain
SMART	SM00717	38	199	249	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-4	205	248	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MYQTILHNRM IPNRYQVSND STHVSGDTYK YHVILIRYHM IFYHVSRDTR KVSDDFNHVS 60 RDTHEVSCDI CRVSDDFYHV SRDTREVSGD FYHVSRDTCE VSDNTYQVSV HLGMETSSSD 120 FSSTTEVAVT PSSAMKIILR IRLSPAWTPE EDACLERLAR GYGFRHWRRV AEEMQPRERR 180 RSPKQCRDRW RDHLARDVYH RPFTADDDAE LAHLRLRGGG GDRWKDISRA AHCRISRAMR 240 RRWRELRKSD AFLRALYWHP DQPVPPLLDD ALSCSDVLDS SVASYHGGCD AVAGGGTIVA 300 PGFACFAA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002092	0.0	AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09.
GenBank	AP002093	0.0	AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636830.1	1e-100	transcription factor MYB3R-5
TrEMBL	A0A0D3EKZ6	0.0	A0A0D3EKZ6_9ORYZ; Uncharacterized protein
STRING	OBART01G07010.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	2e-15	myb domain protein r1