PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G06520.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 284aa    MW: 31124.1 Da    PI: 9.3968
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G06520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-314998150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  OBART01G06520.1 49 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 98
                     79***********************************************8 PP
2K-box101.71e-33117212499
            K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      s++   ++e +a+++qqe++kL+++i++Lq+ +R ++G++++++sl++L+q+e++Lek++ kiR++Knell++++e++qk+e elq++n++Lr+
  OBART01G06520.1 117 SNS-GtVAEVNAQHYQQESSKLRQQISSLQNANRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRS 209
                      333.25999************************************************************************************* PP

            K-box  97 kle 99 
                      k+ 
  OBART01G06520.1 210 KVV 212
                      986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-4241100IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.13241101IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-3342113IPR002100Transcription factor, MADS-box
CDDcd002651.44E-4542115No hitNo description
PRINTSPR004046.3E-334363IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004397IPR002100Transcription factor, MADS-box
PfamPF003191.2E-265097IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-336378IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-337899IPR002100Transcription factor, MADS-box
PfamPF014861.5E-24126211IPR002487Transcription factor, K-box
PROSITE profilePS5129714.079127217IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMNMMTDLSC GPSSMTELTA AAAAAGSGSS AAVAAGSSEK MGRGKIEIKR IENTTNRQVT  60
FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN SVKSTVERYK KANSDTSNSG  120
TVAEVNAQHY QQESSKLRQQ ISSLQNANRT IVGDSINTMS LRDLKQVENR LEKGIAKIRA  180
RKNELLYAEV EYMQKREVEL QNDNMYLRSK VVENERGQQP LNMMGAASTS EYDHMELSSS  240
EHHAAASALR PSAAANYPST RAAAGLQLVL MKSEGVDTRG YVTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-2241128191MEF2C
5f28_B7e-2241128191MEF2C
5f28_C7e-2241128191MEF2C
5f28_D7e-2241128191MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7509400.0FJ750940.1 Oryza sativa clone KCS254F12 MADS-box transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632498.11e-171MADS-box transcription factor 3 isoform X2
SwissprotQ407041e-140MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A0D3EKT40.0A0A0D3EKT4_9ORYZ; Uncharacterized protein
STRINGOBART01G06520.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.16e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]