PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G06400.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 897aa    MW: 97355.6 Da    PI: 6.5408
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G06400.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.8e-191270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OBART01G06400.3 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP
2START147.11.6e-461794092202
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT....... CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg....... 88 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++++++v+  g       
  OBART01G06400.3 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVVNVLPAGangtiel 271
                      789*******************************************************.8888888888************************* PP

                      .................EEEEEEE...EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEEC CS
            START  89 .................galqlmv...aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepks 158
                                       ++l l +    +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p++
  OBART01G06400.3 272 lymqarthkpensepepEILKLKFvfdLQLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSD 365
                      *****************555555422269999**************************************999999****************** PP

                      TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXX CS
            START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqr 202
                      +g+s +++v+h+dl+ +++++++r+l++s+++ ++k+ +a ++ 
  OBART01G06400.3 366 GGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKISMALCKI 409
                      ***************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532771IPR001356Homeobox domain
SMARTSM003896.9E-15975IPR001356Homeobox domain
CDDcd000864.16E-161272No hitNo description
PfamPF000462.4E-161270IPR001356Homeobox domain
SuperFamilySSF466898.98E-171373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-181470IPR009057Homeodomain-like
CDDcd146864.45E-664103No hitNo description
PROSITE profilePS5084822.741169395IPR002913START domain
SuperFamilySSF559611.35E-31170266No hitNo description
CDDcd088755.06E-66173417No hitNo description
Gene3DG3DSA:3.30.530.203.2E-17176388IPR023393START-like domain
SMARTSM002344.2E-32178413IPR002913START domain
PfamPF018521.2E-16179275IPR002913START domain
SuperFamilySSF559611.35E-31296392No hitNo description
PfamPF018523.0E-26300408IPR002913START domain
PfamPF086704.7E-49751896IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM  120
RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA  180
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE  240
ILKDRPLWLR DCRSMDVVNV LPAGANGTIE LLYMQARTHK PENSEPEPEI LKLKFVFDLQ  300
LYAPTTLAPA RDFWLLRYTS ILDDGSLVVC ERSLSSKQGG PSMPLVQPFI RGEMLPSGFL  360
IRPSDGGGSV IHIVDHMDLE PWSVPEVVRP LYESSAMVAQ KISMALCKIQ ALRYLRQVAH  420
EDTRSVITGW GRQPAALRAL SQKLTRGFNE ALNGLADDGW SVIESDGVDD VCISVNSSKV  480
IGCNATFSSG LPIVSTGVLC AKASMLLQDV SHPSLLQFLR EHRSQWADSN LDAFFASAMK  540
PNFCNLPMSR LGGFSGQVIL PLAHTFEPEE FLEVIKLGNA SNYQDTLVHR DLFLLQMYNG  600
VEESSAGTCS ELIFAPIDAS FSDDSPLLPS GFRIIPIDSP LDTSSPNCTL DLASTLEAAT  660
PRSRISGVNG GGGCAAAAAS SSSKAVMTIA FQFAFDGHLQ DSVAAMARQY MRNIISSVQR  720
IAVALSSSRL VPPGAAAAAA QLSPVTPEAA TLPRWICQSY RFHFGAELIK SVDANSSNES  780
ILKAVWHHPS AILCCSLKAM PVFTFANQSG LDMLETTLVA LQDMTPEKVF DDQGRKNLCT  840
ELPNIMEQGM ACMEGGVCVS SVGRAASYEK AVAWKVVDGD GGGAHCICFM FINWTFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0D3EKS00.0A0A0D3EKS0_9ORYZ; Uncharacterized protein
STRINGOBART01G06400.30.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein