PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G06400.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 851aa    MW: 92149.5 Da    PI: 6.5816
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G06400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.2e-191270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OBART01G06400.1 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP
2START138.95.1e-441793702204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W +++++++++             
  OBART01G06400.1 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 258
                      789*******************************************************.8888888888*******88776............. PP

                      EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
            START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                       +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l+
  OBART01G06400.1 259 -NLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLY 351
                      .799***************************************999999********************************************* PP

                      HHHHHHHHHHHHHHTXXXX CS
            START 186 ksglaegaktwvatlqrqc 204
                      +s+++ ++k+ +a+l++++
  OBART01G06400.1 352 ESSAMVAQKISMAALRYLR 370
                      ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532771IPR001356Homeobox domain
SMARTSM003896.9E-15975IPR001356Homeobox domain
CDDcd000863.83E-161272No hitNo description
PfamPF000462.2E-161270IPR001356Homeobox domain
SuperFamilySSF466898.55E-171373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-181470IPR009057Homeodomain-like
CDDcd146864.17E-664103No hitNo description
PROSITE profilePS5084819.188169372IPR002913START domain
Gene3DG3DSA:3.30.530.206.3E-16176347IPR023393START-like domain
SuperFamilySSF559612.88E-31178372No hitNo description
SMARTSM002342.0E-34178372IPR002913START domain
PfamPF018529.7E-42179370IPR002913START domain
PfamPF086704.3E-49705850IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM  120
RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA  180
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE  240
ILKDRPLWLR DCRSMDVVNL YAPTTLAPAR DFWLLRYTSI LDDGSLVVCE RSLSSKQGGP  300
SMPLVQPFIR GEMLPSGFLI RPSDGGGSVI HIVDHMDLEP WSVPEVVRPL YESSAMVAQK  360
ISMAALRYLR QVAHEDTRSV ITGWGRQPAA LRALSQKLTR GFNEALNGLA DDGWSVIESD  420
GVDDVCISVN SSKVIGCNAT FSSGLPIVST GVLCAKASML LQDVSHPSLL QFLREHRSQW  480
ADSNLDAFFA SAMKPNFCNL PMSRLGGFSG QVILPLAHTF EPEEFLEVIK LGNASNYQDT  540
LVHRDLFLLQ MYNGVEESSA GTCSELIFAP IDASFSDDSP LLPSGFRIIP IDSPLDTSSP  600
NCTLDLASTL EAATPRSRIS GVNGGGGCAA AAASSSSKAV MTIAFQFAFD GHLQDSVAAM  660
ARQYMRNIIS SVQRIAVALS SSRLVPPGAA AAAAQLSPVT PEAATLPRWI CQSYRFHFGA  720
ELIKSVDANS SNESILKAVW HHPSAILCCS LKAMPVFTFA NQSGLDMLET TLVALQDMTP  780
EKVFDDQGRK NLCTELPNIM EQGMACMEGG VCVSSVGRAA SYEKAVAWKV VDGDGGGAHC  840
ICFMFINWTF L
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0D3EKR80.0A0A0D3EKR8_9ORYZ; Uncharacterized protein
STRINGOBART01G06400.30.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein