 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART01G05000.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
BES1 |
| Protein Properties |
Length: 161aa MW: 17375.3 Da PI: 10.643 |
| Description |
BES1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART01G05000.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF822 | 145.6 | 4.4e-45 | 38 | 150 | 2 | 112 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspessl 94
+s r+pt++ErEnn++RERrRR++a++iyaGLRa ++y+lpk+aD+n+Vl+ALc+eAG++v+dDG++ r+++++l + + +g s+++ + ss+
OBART01G05000.1 38 TSLRHPTARERENNRQRERRRRQVATRIYAGLRAGAGYALPKHADQNDVLRALCAEAGYLVDDDGNVSRRHDERLaGAGAGGGGSSDQLQVSSY 131
789************************************************************************999999************* PP
DUF822 95 q.sslkssalaspvesysa 112
+ + + a++ + ++++
OBART01G05000.1 132 SgATEAAVAIQHQEQEQEI 150
*777777777777666655 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 161 aa
Download sequence Send
to blast |
MAPGTKAVAA AAGRRGCIRS TRGPWTVRRR GRGGGVTTSL RHPTAREREN NRQRERRRRQ 60
VATRIYAGLR AGAGYALPKH ADQNDVLRAL CAEAGYLVDD DGNVSRRHDE RLAGAGAGGG 120
GSSDQLQVSS YSGATEAAVA IQHQEQEQEI SLELTLSFTY M
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5zd4_A | 7e-13 | 41 | 118 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_B | 7e-13 | 41 | 118 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_C | 7e-13 | 41 | 118 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_D | 7e-13 | 41 | 118 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP002523 | 0.0 | AP002523.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0013F10. |
| GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
