PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G04810.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 604aa    MW: 66355.1 Da    PI: 7.4959
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G04810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-065681126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+ C +f  +G C + d C+FaHg
  OBART01G04810.1 56 YKTRVCETFVTSGRCMFEDGCTFAHG 81
                     9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.8E-145087IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-95487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.455583IPR000571Zinc finger, CCCH-type
SMARTSM003560.00165582IPR000571Zinc finger, CCCH-type
SMARTSM003560.42137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.206137165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4140162IPR000571Zinc finger, CCCH-type
SMARTSM007029.8E-19378557IPR006620Prolyl 4-hydroxylase, alpha subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418Molecular FunctionL-ascorbic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAGRGGMEWE VGRRRDAEDV IVLSPGPPAR RRPPPVKAVE PDSGGFAYEP PEKLFYKTRV  60
CETFVTSGRC MFEDGCTFAH GDEELRPSLT ACAGGWRKPS PSLAAPPVAV AVAPTPPPAQ  120
VVHELLARGS GSGGGHRAIT KVCFEFRDKG TCYFGETCAF PHVSAAEIRQ GSRLSSMSSS  180
SWEMPARRSV AVTVPRTFVS VPPVAPPPPP PHYRVNNNSS SSSGYNAASM AAAAPPAASD  240
ANLVAQQPPP EQGGRKMTRL EMLSLKKMTG IYGDWLEGAI EHYLNAGVVS IKLWMNRFDY  300
RGLMQPFDGI CEIPIIKLRP YQLNYYNQEA VGKGQHRWGK WFDLSIAQEK LVNSTGGSTA  360
SSSHLVYPSK SKRLSWHPRI FLYEGFLSDM ECDHLVSTGR GNMESSLAFT DGDRNSSYNN  420
IEDIVVSKIE DRISLWSFLP KENGENIQVL KYGVNRRGSI KEEPKSSTGG HWLATILIYL  480
SDVKQGGETV FPRSEMKDAQ AKEGAPSQCS GYAVRPAKGN AILLFNLRPD GEIDKDSQYE  540
ECPVLEGEKW LAIKHIHLRK LDSPKSSLAS EDECTDEDDR CVRWAASGLS NLILSAYNHE  600
KIIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jig_A9e-3237355815217PROLYL-4 HYDROXYLASE
2jig_B9e-3237355815217PROLYL-4 HYDROXYLASE
2jij_A1e-3137355824226PROLYL-4 HYDROXYLASE
2jij_B1e-3137355824226PROLYL-4 HYDROXYLASE
2jij_C1e-3137355824226PROLYL-4 HYDROXYLASE
2v4a_A1e-3137355824226PROLYL-4 HYDROXYLASE
2v4a_B1e-3137355824226PROLYL-4 HYDROXYLASE
2v4a_C1e-3137355824226PROLYL-4 HYDROXYLASE
2v4a_D1e-3137355824226PROLYL-4 HYDROXYLASE
3gze_A9e-3237355816218Predicted protein
3gze_B9e-3237355816218Predicted protein
3gze_C9e-3237355816218Predicted protein
3gze_D9e-3237355816218Predicted protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076620.0AK107662.1 Oryza sativa Japonica Group cDNA clone:002-131-G11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3EK610.0A0A0D3EK61_9ORYZ; Uncharacterized protein
STRINGOBART01G04810.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1354177