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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G03880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-X1 | ||||||||
Protein Properties | Length: 899aa MW: 98827.9 Da PI: 8.4425 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 20.2 | 1.3e-06 | 252 | 269 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C CH GpCppC OBART01G03880.1 252 CGIHRCPVDCHDGPCPPC 269 ****************** PP | |||||||
2 | zf-NF-X1 | 16.5 | 1.8e-05 | 359 | 378 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCpp.Cp 19 CG+HkC + CH+G C + C+ OBART01G03880.1 359 CGRHKCPERCHRGSCVEtCR 378 ***************99997 PP | |||||||
3 | zf-NF-X1 | 16.5 | 1.8e-05 | 412 | 431 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C + C+eG+C pCp+ OBART01G03880.1 412 CGRHACRRRCCEGDCAPCPE 431 ******************96 PP | |||||||
4 | zf-NF-X1 | 22.3 | 2.9e-07 | 439 | 458 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC ++CH+G C pCp+ OBART01G03880.1 439 CGNHKCLSPCHRGACAPCPL 458 ******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 6.71E-6 | 98 | 156 | No hit | No description |
PROSITE profile | PS50089 | 8.919 | 99 | 150 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 99 | 149 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00438 | 0.02 | 199 | 217 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.034 | 200 | 216 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.53E-9 | 242 | 290 | No hit | No description |
Pfam | PF01422 | 5.8E-5 | 252 | 269 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0011 | 252 | 271 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.94E-7 | 295 | 335 | No hit | No description |
Pfam | PF01422 | 0.41 | 305 | 323 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.082 | 305 | 324 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.34E-9 | 349 | 398 | No hit | No description |
Pfam | PF01422 | 0.0033 | 359 | 378 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.035 | 359 | 379 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.98E-9 | 402 | 450 | No hit | No description |
Pfam | PF01422 | 0.004 | 412 | 430 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.087 | 412 | 431 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.44E-10 | 429 | 477 | No hit | No description |
Pfam | PF01422 | 4.8E-5 | 439 | 457 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0038 | 439 | 458 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 25 | 502 | 517 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 36 | 506 | 516 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 88 | 525 | 534 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 170 | 525 | 570 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.35 | 607 | 617 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 200 | 607 | 625 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 12 | 661 | 678 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.1 | 661 | 679 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.44 | 724 | 745 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 170 | 726 | 738 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 899 aa Download sequence Send to blast |
MPFSYAAAAS GSASSSRKPV PVAAAAARRP APSPSNPSAV SDSDPSSYSS SGEETDLTAS 60 DPAAASVISS YLSVAGDGAD LSKVGIFLSS AARRRSPPCL ICFDPIRLSD PVWSCSASCF 120 ALLHLHCIQS WAHQSSSAAP SPTWGCPKCR FPYPKSQTPT SYLCFCSKTV DPAPDPWILP 180 HSCGDVCGRR LNADRDSGCE HNCLLLCHPG PCPPCPAIVP NAMCFCGSHR ETRRCSHQRY 240 SCSGKCNKRL GCGIHRCPVD CHDGPCPPCA VRGKHKCECG ETMEERLCSE RVFQCKRECG 300 GMLQCGKHSC ERGCHAGKCG GCPLQGRRTC PCGKKDYPSL DCDAEAATCG STCEKVLGCG 360 RHKCPERCHR GSCVETCRLV ITKSCRCGGL KKEVPCYQEL TCERKCQRLR NCGRHACRRR 420 CCEGDCAPCP EVCDKRLRCG NHKCLSPCHR GACAPCPLMK TISCNCGQTF FEVPCGTEKN 480 QKPPKCSKKC NIARLCRHKL ECRPHKCHYG ACPPCKLICG EELSCGHRCK LRCHGPIAPP 540 NPEFTLKPIK RKKEKHIDST PGTPCPPCQE VVLVPCFGQH LGQERAILCS KRRQFPCQNL 600 CGNPLNCGNH YCTKACHVLQ IPLSQPEGDQ LAILSLASAS AFAEPCEECN LPCQRVREPP 660 CSHPCPLPCH LNDCPPCKAL VKRPCHCGAM VHAFECMYYN NLNATKQQKV RSCGGPCHRK 720 LPNCPHLCSE ICHPGQCPSV DQCMKKVNVR CACNNLKKEW ICQDVLKEYR QSGRDPKQIP 780 KNQYAVGLLA CGEDCVKKVK AADSELHLRK IQEIKTPAVE VENVPKRRKK RNRGQESVES 840 SKFQEIKAVA LKFLLVIFLC IIVVAGLYLL WKGVYRLSDW MNDMEEQRAR QRHLKPGRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066765 | 0.0 | AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621682.1 | 0.0 | NF-X1-type zinc finger protein NFXL2 | ||||
Swissprot | Q9FFK8 | 0.0 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | A0A0D3EJU8 | 0.0 | A0A0D3EJU8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G03880.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10773 | 35 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |