PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G01770.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 576aa    MW: 63415 Da    PI: 6.6258
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G01770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-17428472147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++++eEdell++++++lG++ W++Ia +++ gRt+k++ ++w++ 
  OBART01G01770.1 428 RRSFSEEEDELLLKLHALLGNR-WSLIAGRLP-GRTDKEVMNHWNSN 472
                      6789******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF118053.1E-1221296IPR021763Protein of unknown function DUF3326
SuperFamilySSF466895.3E-14423487IPR009057Homeodomain-like
PROSITE profilePS5129422.778423477IPR017930Myb domain
SMARTSM007177.5E-16427475IPR001005SANT/Myb domain
PfamPF002491.7E-15428472IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-20430473IPR009057Homeodomain-like
CDDcd001679.93E-6448473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MLYWPMPNTL YVEGYALDRF AEGSWALQPV HQNKVGLVLD SGIEEELRLR HLQVADAARA  60
SLGLPVVEYI VTDTPLEIKT WFDPKCGKST GSVGNSDSLL RAVEALVNRS DVNAVAVVAR  120
FPDDDPEDSD CYREGKGVDL LAGVEAIISH LIVKKFKIPA AHAPAVLPPV LSLSVSPRSA  180
AEEIGHTFLP CVLAGLSNAP QYVMRRNGNM DNGCIVASDV DSVILPKDAC GGDGTIAFAR  240
TATKNKPLII TVQENETVLD DTPDKFNIEA LNVQNYWEAI GVIAAHKAGI NPNALRRQGI  300
DHLKSSLRLY PAQNRGSRKS ACSPPQQMLG HMHLLCFLSG APLEISISRM LTYQLVWVKN  360
SGKIVFGYLK FQKFEAGIWN PHRIALCSIR ILVFSASLQV SSEPPPRLIS EHLPAGDPPS  420
PLSRSRKRRS FSEEEDELLL KLHALLGNRW SLIAGRLPGR TDKEVMNHWN SNLMDSTIEH  480
PPSLHDDEHR RRRRHLRSEA HDERGAKHPS HNSSSSSKDV NGDECTVADD ASSCNHQDDN  540
RAVAELNLEL TLSTPCIYLL LGQDREDGSK SNQGLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424429SRKRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028600.0AP002860.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0409B08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695730.10.0PREDICTED: uncharacterized lipoprotein syc1174_c-like
SwissprotP084524e-88Y1174_SYNP6; Uncharacterized lipoprotein syc1174_c
TrEMBLA0A0D3EJ580.0A0A0D3EJ58_9ORYZ; Uncharacterized protein
STRINGOBART01G01770.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1077288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-10MYB family protein