PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G26450.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 347aa    MW: 36625.9 Da    PI: 8.2567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G26450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-14164207755
                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  OB12G26450.1 164 IAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVKELQ 207
                   68**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.843157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-17163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-18164215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-14164211No hitNo description
SuperFamilySSF474591.3E-16164217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-12164207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEDSSFFMQW AMDTLHQLPS DAAAPAYATD GGDGASFPSL QALRNGASAS HGTAGFRDLT  60
VQVDNVHRAN SWSSRASPGG AATAAGWSPH LTGGSSSARG SRPMSWNFSA ASAQPTTDDS  120
AGGGGGGVPA PPLEPARAAG KKGGGGSSSG HAAAAPGYGP DPIIAERRRR EKINQRFIEL  180
STVIPGLKKM DKATILGDAV KYVKELQEKV KSMEDGGGGG RSAMVVRKQC RQQQLQSSDG  240
GTSRLPEIEA RLSEKSVLLR IHCGNARGML VRLLSEVEEL RLAITHTSVM PFPASTVIIT  300
ITAKVEEGFN STVEEIVRRL DSALLHQYNN TNSSTTEETE EIIKKRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERRRRE
2166171RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G26450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618735.11e-142transcription factor NAI1 isoform X2
TrEMBLJ3NF870.0J3NF87_ORYBR; Uncharacterized protein
STRINGOB12G26450.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-34bHLH family protein