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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OB12G26370.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
NAC |
| Protein Properties |
Length: 345aa MW: 38601.1 Da PI: 9.242 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB12G26370.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 152.2 | 2.4e-47 | 40 | 178 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekew.yfFskrdkkyatgkrknratksgyWkatgk 88
pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk + +++eke+ yfF+ r +ky+++ r+nr+t sg+Wkatg
OB12G26370.1 40 FPGFRFHPTDQELVRFYLTRKVEKKPFSI-DIIKELDIYKHDPWDLPKashgvvlqgSSSTTEKECrYFFCLRGRKYRNSIRPNRVTGSGFWKATGI 135
69***************************.99***************66888887663334556667****************************** PP
NAM 89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
dk+++s +g +glkk+Lv+y+g+a +g+ktdW+mhe+rl
OB12G26370.1 136 DKPIFSLtgaGGDCIGLKKSLVYYRGSAGRGTKTDWMMHEFRL 178
*****987767777***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MKDKRLERII KESGSPGSAG TGSAALAGVE EDLQDDDLVF PGFRFHPTDQ ELVRFYLTRK 60
VEKKPFSIDI IKELDIYKHD PWDLPKASHG VVLQGSSSTT EKECRYFFCL RGRKYRNSIR 120
PNRVTGSGFW KATGIDKPIF SLTGAGGDCI GLKKSLVYYR GSAGRGTKTD WMMHEFRLPS 180
SSPAPDHPAA ANEIWTICRI FKRSTSYTKG RAAAASMNKR SHHHQLQHMQ HIQQQQHYYH 240
HDHYRRHYAS MAAATNSVAV ESSDAETTRS QLPQPYCHVD LADIRHHRQS APFMLDFHAG 300
ASSSSSLSST GWSELVSLRD GGGSSGNSSW DELGRIMEIS TNSPN
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-43 | 41 | 209 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-43 | 41 | 209 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-43 | 41 | 209 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-43 | 41 | 209 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-43 | 41 | 209 | 22 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 2e-43 | 41 | 209 | 22 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 2e-43 | 41 | 209 | 22 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 2e-43 | 41 | 209 | 22 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 2e-43 | 41 | 209 | 22 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 2e-43 | 41 | 209 | 22 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 2e-43 | 41 | 209 | 22 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 2e-43 | 41 | 209 | 22 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 2e-43 | 41 | 209 | 19 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-43 | 41 | 209 | 19 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003829 | 1e-79 | AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01. |
| GenBank | AP004314 | 1e-79 | AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05. |
| GenBank | AP014963 | 1e-79 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012615 | 1e-79 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
| Publications
? help Back to Top |
- Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
Plant Signal Behav, 2016. 11(6): p. e1181245
[PMID:27159137] - Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
Nat Plants, 2016. 2: p. 16013
[PMID:27249348] - Shahnejat-Bushehri S, et al.
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
Front Plant Sci, 2017. 8: p. 214
[PMID:28326087] - Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
Plant J., 2017. 92(6): p. 1106-1120
[PMID:29032592] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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