PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB12G24770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 19252.9 Da PI: 10.2373 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.9e-18 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 g++G++++k +grW+AeIrd+ + + r+++g+f+tae Aa a++aa+++++g OB12G24770.1 42 GFRGIHRRK-SGRWAAEIRDV-I---QgCRVWIGTFDTAEAAATAYDAAALAIHG 91 89****999.7*********5.2...35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.192 | 42 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-25 | 42 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-19 | 42 | 99 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.4E-12 | 42 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.3E-26 | 43 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-7 | 43 | 54 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.31E-12 | 43 | 98 | No hit | No description |
PRINTS | PR00367 | 5.1E-7 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MVLPASRRPP APTAAAALQR GKNRRNKKKG KTGRRPAVSW HGFRGIHRRK SGRWAAEIRD 60 VIQGCRVWIG TFDTAEAAAT AYDAAALAIH GSKAKTNFHG YRATPPASLV QTKEPPAAEL 120 CYAAPSPVLL AHALEATQGW EFEPYIGVVH GLSLMDINYT YAAADEEQGA AAAGLWYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 33 | 98 | 4 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB12G24770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015698601.1 | 1e-104 | PREDICTED: ethylene-responsive transcription factor RAP2-3-like | ||||
TrEMBL | J3NER9 | 1e-127 | J3NER9_ORYBR; Uncharacterized protein | ||||
STRING | OB12G24770.1 | 1e-128 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15615 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-14 | ERF family protein |