PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24620.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 351aa    MW: 37103.5 Da    PI: 7.0095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.6e-14146192455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h   E+rRR+riN++f  L++l+P +      K s +++L ++++Y+ksLq
  OB12G24620.1 146 THGLTEKRRRSRINEKFKMLQQLVPGC-----DKSSQSSTLDRTIHYMKSLQ 192
                   78899*********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-16140197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.605142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-14145196No hitNo description
Gene3DG3DSA:4.10.280.101.7E-16145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MMSLPYYSGD LGDGAAVDIT LDQMFGDHDD SHSGDLFELV WACAAGGGAG EIQYHAGAPC  60
CHRRTAAAAP EMPPSEDEMA AWLSEIVTGS GNDDHQLSRA AGGEIIQAPA VESGERRRME  120
NAEKLPRKEE KPAKHKARRN PRYAETHGLT EKRRRSRINE KFKMLQQLVP GCDKSSQSST  180
LDRTIHYMKS LQQQLQGPSG PPGLGIAGLM PNSVGLAMYA TVMRPAAAAV YPAVVQPRPA  240
PFVPSPAAVG VVRLPLPWPS RSAPALAPPA EGGRPVVAGG LPHPAAAPVV PFGAPMLPLV  300
PMMAAAGPGG APPLMYPPST SIYWGTGVPT APTLDPSLFE MKSVYMQVLN D
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080421e-70AK108042.1 Oryza sativa Japonica Group cDNA clone:002-137-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619633.14e-68transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLJ3NEQ40.0J3NEQ4_ORYBR; Uncharacterized protein
STRINGOB12G24620.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165781111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.18e-14bHLH family protein