PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24610.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 456aa    MW: 48513.7 Da    PI: 10.6474
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.1e-31390447359
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  OB12G24610.1 390 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 447
                   9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-18341386IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-33376447IPR003657WRKY domain
PROSITE profilePS5081130.148383446IPR003657WRKY domain
SuperFamilySSF1182907.59E-27386447IPR003657WRKY domain
SMARTSM007744.4E-38388448IPR003657WRKY domain
PfamPF031067.0E-27390446IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAAGTFHTQI SAPHQGQNRK NPFFTNNNIE DSISLTLVLD TADPHGEQFP AAHLTNPTAG  60
ISPRHPSLQP KADLRAARSG GLFLVRFSSG RPPAMEEEVE AANRAAVESC HRVLALLSQQ  120
QDPALLRSIA SETGDACAKF RKVVSLLGNG GAGGGAGGGR GGGGHARGRI AGRSSKPAAV  180
LREKGFLERS SSSAHLGMMM ASAATPSTSS AHLRNRIGGG APESSSRGLD LVSSSSKGGH  240
QFEPPKLVQP LSVQFQFGAT AHRYPFQQHQ QKLQAEMFKR SNSGISLKFD SPSATGTTMS  300
SAFMSSLSMD GSVASLEGKP PFHLIGGPVA SDPVNAHHAP KRRCTGRGED GSGKCATTGR  360
CHCSKRRKLR IKRSIKVPAI SNKIADIPPD EYSWRKYGQK PIKGSPHPRG YYKCSSVRGC  420
PARKHVERCV DDPAMLIVTY EGEHNHTRLP TQSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19381450775WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706480.0AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664169.10.0PREDICTED: protein WRKY1
SwissprotQ93WU64e-89WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLJ3NEQ30.0J3NEQ3_ORYBR; Uncharacterized protein
STRINGOB12G24610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-71WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]