 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB12G21400.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C3H |
| Protein Properties |
Length: 332aa MW: 36474.1 Da PI: 7.9291 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB12G21400.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.3 | 1e-06 | 43 | 64 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C+ f ++ C++Gd C +aHg
OB12G21400.1 43 PCPEFKKGAGCRRGDMCEYAHG 64
8******88************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MYSFKVRACS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPEFKKG AGCRRGDMCE 60
YAHGVFESWL HPAQYRTRLC KDGVGCARRV CFFAHTPEEL RPLYVSTGSA VPGKNLVPSN 120
LDDLFSAELA AASRSPRYAD QGGAAFSPTR KAAVLNQFQQ QQQSLLSPRA AAVAPEPVSP 180
MSSRLLAALA QREKMQQHTL RSMSSRDLAA GASLLVGSPV SSSMSKWGFP SGNPDWGADD 240
EELGRLKRCS SFELRSGANG SHEPDLSWVN TLVKEPTPEK PSVHRTTITT AAMDSIGILG 300
QTTSREHIVG EEDTAGVISS WLEQLQLDEM VV
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT2G41900.1 | 7e-77 | CCCH-type zinc finger protein with ARM repeat domain |
