 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OB12G20680.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 239aa MW: 26907 Da PI: 8.4829 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB12G20680.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 81.5 | 5.4e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rien+ rqvtfskRr g+lKKA E+ vLCd++va+i+fs +gkly+++s
OB12G20680.1 10 RIENEVSRQVTFSKRRSGLLKKAREIAVLCDVDVALIVFSGKGKLYDFAS 59
8***********************************************86 PP
|
| 2 | K-box | 73.8 | 5e-25 | 92 | 172 | 16 | 96 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
s++ ++ L+++ie L+++qR+llG++L+sL+l+e+qqLe+q+++sl+ iRs+Kn+lll++i elq+kek+l e+n+ L+k
OB12G20680.1 92 SMSYDHIMLRARIEALKKSQRNLLGQELDSLTLREIQQLEDQIDTSLRIIRSRKNHLLLKSIAELQHKEKMLMEKNTILEK 172
67778889*********************************************************************9987 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 31.342 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 7.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.06E-30 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 9.35E-40 | 2 | 71 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.7E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.7E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.7E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 13.664 | 90 | 185 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.2E-21 | 92 | 172 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MGRGKVQLRR IENEVSRQVT FSKRRSGLLK KAREIAVLCD VDVALIVFSG KGKLYDFASP 60
HTSMERILEK YARHVLFEGN NMAQERPEVE GSMSYDHIML RARIEALKKS QRNLLGQELD 120
SLTLREIQQL EDQIDTSLRI IRSRKNHLLL KSIAELQHKE KMLMEKNTIL EKASSPTEVL 180
LGNTAPTEVV GVPISNAADA FVPNLNICCD DSDEPGTVAV PLGWSKSNSG LPWWMLQSP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY250075 | 1e-133 | AY250075.1 Oryza sativa (japonica cultivar-group) MADS20 (MADS20) mRNA, complete cds. |
