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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB12G15560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | DBB | ||||||||
Protein Properties | Length: 225aa MW: 25059.9 Da PI: 6.473 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.7 | 1.7e-06 | 5 | 45 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ +e+ e+ C ++ lC+ C + H+ H+v OB12G15560.1 5 CDACEQAEAAVLCCADEAALCRRCDAAVHSAnrlagkhHRV 45 *****************************667899996655 PP | |||||||
2 | zf-B_box | 19.3 | 2.3e-06 | 71 | 98 | 4 | 31 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCll 31 ++C+ ++ek +fC +++ llC++C OB12G15560.1 71 PTCDICQEKTGYFFCLEDRALLCRSCDX 98 79************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.741 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.89E-4 | 5 | 47 | No hit | No description |
SMART | SM00336 | 2.3E-6 | 5 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.5 | 68 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00185 | 73 | 97 | No hit | No description |
PROSITE profile | PS50119 | 8.631 | 73 | 113 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHHRVALLLP ASAAGTVGPS 60 PAAAAGDDVH PTCDICQEKT GYFFCLEDRA LLCRSCDXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXAGAAASGE VLRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB12G15560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12151 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 4e-31 | light-regulated zinc finger protein 1 |