PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G13660.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 487aa    MW: 50324.1 Da    PI: 6.6356
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G13660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.4e-09220275754
                   --HHHHHHHHHHHH........HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox   7 ftkeqleeLeelFe........knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +t+  l++  + F+        + ryp+ +++  LAk++gLt +qV++WF N R +
  OB12G13660.1 220 YTALALRTISRQFRclrdaiaaQLRYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 275
                   566666666666666666665579******************************88 PP
2BELL112.62.1e-36172243172
          BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   erqelq+kk+kLls+l+eV++rY+qy+ q+q+v+++Fea+ag  sa+ Yt+lAl++iSr+FrcL+daia q+
  OB12G13660.1 172 ERQELQMKKSKLLSMLDEVEQRYRQYHRQMQAVAAAFEAAAGPRSARTYTALALRTISRQFRCLRDAIAAQL 243
                   79*******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-58104241IPR006563POX domain
PfamPF075261.4E-48106240IPR006563POX domain
PROSITE profilePS5007111.564211279IPR001356Homeobox domain
SMARTSM003891.2E-8214283IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-18230292IPR009057Homeodomain-like
SuperFamilySSF466893.55E-12235286IPR009057Homeodomain-like
CDDcd000861.14E-9244280No hitNo description
PfamPF059201.7E-12245275IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAAYFAGGGA GTDVQAGTDG LQTLYLMNPN FVGYTDATAT PGGGGGGGVA SMMLLNSAVS  60
TLTPASFVHQ PAPPAGPPLR RVVSGGYEEK HAVAPPPEEE EQEQAVMRSR YLKAAQELLD  120
EAVSVSRGVE DAKSAAAVKK KEDSEDGRGG EEDGGGSKSG GGGGAGEMST AERQELQMKK  180
SKLLSMLDEV EQRYRQYHRQ MQAVAAAFEA AAGPRSARTY TALALRTISR QFRCLRDAIA  240
AQLRYPKDSD KVMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYAEETK AKEGPVAGDG  300
GGGGSNNTGD SVVEAAKPDS CVGIGMSSSA MVAAGTTTSG DGVHTGGQGA PASFHGGDAS  360
FQHKLKRARP GGKHVPDVAV SHRELLMKFM EAGGEGASGH HPDIGDVAGT GGYTLFAPPP  420
YGQFGSDHFA AFAGHGGVSL TLGLPHGAEQ TPVSFHGGGA GGGAAGYDMN MQSTKSLATQ  480
LMRNFVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G13660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1208138e-94AK120813.1 Oryza sativa Japonica Group cDNA clone:J023014M03, full insert sequence.
GenBankAK1208448e-94AK120844.1 Oryza sativa Japonica Group cDNA clone:J023022M14, full insert sequence.
GenBankCT8340748e-94CT834074.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA002G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664357.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLJ3NBK80.0J3NBK8_ORYBR; Uncharacterized protein
STRINGOB12G13660.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.13e-31BEL1-like homeodomain 5