PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G12560.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 439aa    MW: 48205.8 Da    PI: 5.8124
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G12560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS34.92.1e-11277162233
          GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrlldesvsles.erdevLklvks 233
                   +e L++ Ae+l+++f+f+  v+ +ledl+  +L    ++k+gEalaV++ lqlhrll+ + + +   r++ L+++ s
  OB12G12560.1   2 AELLHDEAEKLNMEFQFHG-VVGQLEDLDSGNLqnvlEIKSGEALAVSCNLQLHRLLAADDDATYsSRSAHLNQMAS 77 
                   6789***************.688888887666544458999***************976554433268888887766 PP
2GRAS250.18.5e-777341719305
          GRAS  19 laqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                   +  a +a+l+++ a+++++p  Rlaa+f+ AL+++l++ v+++++al + ++s +    +  a++  ++v P+lk+++lt+N+aIlea+ege+ vH+
  OB12G12560.1  73 NQMASIAQLQHMaAASSRQPSGRLAAVFADALSRKLLNLVPGISSALLSLANSAD-AHLVPVARRHMFDVLPFLKLAYLTTNHAILEAMEGERFVHV 168
                   5557799*****666667****************************988777744.444456778899***************************** PP

          GRAS 115 iDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVn 205
                   +Df+  + +++QW+aL++a+ sR+egpp+lRiT+v++    ske l +++  L+k Ae++++pf+fn+ v+ +l+++++++L     v++gEalaV+
  OB12G12560.1 169 VDFSgpAANPVQWIALFHAFRSRREGPPHLRITAVHD----SKEFLATMATVLSKEAEAFDIPFQFNA-VEAKLDEMDFDALrhhlGVRSGEALAVS 260
                   ***966899****************************....9**************************.799999999998844446777******* PP

          GRAS 206 lvlqlhrll...........................................................desvsleserdevLklvkslsPkvvvvve 243
                   +vlqlhrll                                                             ++++++   ++L+ ++s s+k++v++e
  OB12G12560.1 261 VVLQLHRLLavddgrrqaaagcltplqiiarssprsfgellerelntrlqlspdasvvsslspnspevTAPHATPK-LGSFLSSLRSPSSKIMVMTE 356
                   ****************************************************************997755555555.888***************** PP

          GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
                   qea+hn++ F erf eal+yy++lfd+l+ + ++ + er+ vEr++lg+ei+ vvacegaer
  OB12G12560.1 357 QEANHNGGAFQERFDEALNYYASLFDCLQRS-SAPAAERARVERVVLGEEIRGVVACEGAER 417
                   ****************************888.678899***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.47327439IPR005202Transcription factor GRAS
PfamPF035142.9E-7473417IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAELLHDEAE KLNMEFQFHG VVGQLEDLDS GNLQNVLEIK SGEALAVSCN LQLHRLLAAD  60
DDATYSSRSA HLNQMASIAQ LQHMAAASSR QPSGRLAAVF ADALSRKLLN LVPGISSALL  120
SLANSADAHL VPVARRHMFD VLPFLKLAYL TTNHAILEAM EGERFVHVVD FSGPAANPVQ  180
WIALFHAFRS RREGPPHLRI TAVHDSKEFL ATMATVLSKE AEAFDIPFQF NAVEAKLDEM  240
DFDALRHHLG VRSGEALAVS VVLQLHRLLA VDDGRRQAAA GCLTPLQIIA RSSPRSFGEL  300
LERELNTRLQ LSPDASVVSS LSPNSPEVTA PHATPKLGSF LSSLRSPSSK IMVMTEQEAN  360
HNGGAFQERF DEALNYYASL FDCLQRSSAP AAERARVERV VLGEEIRGVV ACEGAERLRP  420
LVFVIEEVQT YFTFDREFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-229541757310Protein SCARECROW
5b3h_D2e-229541757310Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G12560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3780330.0FQ378033.1 Oryza brachyantha chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698206.10.0PREDICTED: scarecrow-like protein 3
TrEMBLJ3NB980.0J3NB98_ORYBR; Uncharacterized protein
STRINGOB12G12560.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-66scarecrow-like 3