PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G10410.1
Common NameLOC102718409
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 300aa    MW: 32827.4 Da    PI: 8.1082
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G10410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-3155108255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   prlrWtpeLH +Fv+av++LGG+++AtPk +l+lm+v gL+++hvkSHLQ+YR+
  OB12G10410.1  55 PRLRWTPELHLCFVRAVDRLGGQDRATPKLVLQLMNVRGLSIAHVKSHLQMYRS 108
                   9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.26951111IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-3051109IPR009057Homeodomain-like
SuperFamilySSF466898.6E-1652109IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2354110IPR006447Myb domain, plants
PfamPF002492.6E-956107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
METAGKEVGS TGGGGGGAAA GNDGSSTSSS TVEEEGERRT SSSSSVRPYV RSKNPRLRWT  60
PELHLCFVRA VDRLGGQDRA TPKLVLQLMN VRGLSIAHVK SHLQMYRSKK IDESGQVIGG  120
GSWREEHQYI HHGGQAYSVG HLSLPALLHH RHITAGSGTR PRFGNAWSPW RCHASYWPRA  180
GHHLFVGSKP NYPPPPPAEA DEAFHTASSH LPDFVVQGSS NHQRRVLKEI ICNEDEGEGP  240
HLNLDLSLNI VNAGPRREKR KREFSLGKKH NEEDHDNHTG IIGGDQEEES CATGLSLSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1854110258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1854110258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-1856110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1856110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1856110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1856110357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1854110258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1854110258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1854110258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1854110258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1854110258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1854110258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255262RREKRKRE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G10410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411711e-118AK241171.1 Oryza sativa Japonica Group cDNA, clone: J065117O05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663711.10.0PREDICTED: transcription activator GLK2-like
TrEMBLJ3NAN30.0J3NAN3_ORYBR; Uncharacterized protein
STRINGOB12G10410.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-37G2-like family protein