PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB11G25500.1 | ||||||||
Common Name | LOC102701038 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29000.6 Da PI: 6.0358 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.5e-11 | 193 | 233 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq OB11G25500.1 193 KRRRERINERLRILQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 233 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.15E-13 | 181 | 237 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.4E-14 | 181 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-14 | 181 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.44 | 183 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-11 | 189 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-8 | 193 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEAKCGAIWS SADARSEESE MIAHLKSMFW GSSDVDGNLY SPDSSVNSCV TTSTMPCSLF 60 LPLMDYEGYG SVPLMASTGM DICSDHQHQV VATRNKAMSG SKRIFPMDEH FEQQQQKKPQ 120 KKTRPGRSVS STLSSDITDS ETSSELVNST YSSGCSFGED SVATTDESIV LKQNGNLRGH 180 KKSSKDTQSL YAKRRRERIN ERLRILQQLI PNGTKVDIST MLEEAVQYVK FLQLQIKLLS 240 SDDTWMFAPL AYDGMSMGLN Q |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB11G25500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015697725.1 | 0.0 | PREDICTED: transcription factor bHLH139-like | ||||
TrEMBL | J3N9R4 | 0.0 | J3N9R4_ORYBR; Uncharacterized protein | ||||
STRING | OB11G25500.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14002 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 7e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102701038 |