PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G24570.1
Common NameLOC102719624
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 280aa    MW: 30340.8 Da    PI: 9.0904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G24570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12.1e-054793151
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
           HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51
                  +++ + erE+  Rd++N+ f eL ++l +      +   Ka++L  A + +
  OB11G24570.1 47 KKTHKAEREKLKRDQLNDLFVELSSMLDPE----RQNSGKATVLGDAARVL 93
                  678899*********************885....23444555666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-844115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1144110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.8234696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002552102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MPQVRNQNLG MVADTESSGS LGGSSNAASE KAVDGSVDKR SQEKAPKKTH KAEREKLKRD  60
QLNDLFVELS SMLDPERQNS GKATVLGDAA RVLRDLVSQV ESLRKEQSAL LTERQYVGSE  120
KNELHEENSM LRAQILELHN ELCARMGSNS LNPSNPVMSQ PVANNSTNSA TQPIPHQIWR  180
NGPNLSNLAM VHPASTLSPL HNQHHHSAGV VGQVYASRPQ ELQLFPGTSV SMEREQSRLG  240
TTPAASSGLT DSLPGQLRLS LPQSSQEESS SGSKKGRKKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G24570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680170.0AK068017.1 Oryza sativa Japonica Group cDNA clone:J013132D22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663029.10.0PREDICTED: transcription factor bHLH47-like isoform X1
TrEMBLJ3N9H10.0J3N9H1_ORYBR; Uncharacterized protein
STRINGOB11G24570.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129592124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-32bHLH family protein