PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G21420.1
Common NameLOC102721688
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 312aa    MW: 34670.6 Da    PI: 8.4794
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G21420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.31.1e-34181481128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lp GfrF Pt++elv +yL +++ + +l++ e+i++++i++++Pwd+   v ++ek  yfF+++  ky++++r+nr++ +g+W+a g++ +++ k  
  OB11G21420.1  18 LPTGFRFLPTEDELVINYLYPRALHVPLPC-EIITDINILHHNPWDIV-PVVETEKGKYFFTRKVVKYPSSHRRNRVAGDGFWRAAGSEVPIYYKpe 112
                   699***************************.89**************5.344568999************************************998 PP

           NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +g lvg+++tLvf++g+ +++++t+W m e rl
  OB11G21420.1 113 ganEGVLVGMRRTLVFHNGKPRNAKRTEWAMRELRL 148
                   8877778**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3814153IPR003441NAC domain
PROSITE profilePS5100538.14118217IPR003441NAC domain
PfamPF023654.8E-1719148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MANTGFSIPV VNDAMIHLPT GFRFLPTEDE LVINYLYPRA LHVPLPCEII TDINILHHNP  60
WDIVPVVETE KGKYFFTRKV VKYPSSHRRN RVAGDGFWRA AGSEVPIYYK PEGANEGVLV  120
GMRRTLVFHN GKPRNAKRTE WAMRELRLAG AAMLPRAVMR RGTGDGSVPP RVCPEETVAQ  180
KSDGLSATVP AKFASAPLVR TIVKPDSSWL ICRIYKKRQR TPRVIIPPAI GNIGVDVIPN  240
DIANAREGHV RFIDFLGQPP HIDSSSPHSC TVDPSLLDER TDESTGCSED KDSHGLNEGN  300
QSIDQASKPR EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-251314810140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G21420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663472.10.0PREDICTED: NAC transcription factor NAM-B1-like isoform X1
TrEMBLJ3N8K60.0J3N8K6_ORYBR; Uncharacterized protein
STRINGOB11G21420.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.13e-32NAC domain containing protein 41