PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G21270.1
Common NameLOC102720000
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 302aa    MW: 34648.1 Da    PI: 9.0842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G21270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033103125223
                   EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   +C+ C ++++++ +L  Hi+  H
  OB11G21270.1 103 SCSVCWRVYPTSRLLSIHISEaH 125
                   6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003553.275100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028077100IPR007087Zinc finger, C2H2
SMARTSM003557.4102125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104125IPR007087Zinc finger, C2H2
SMARTSM003550.38140165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQQRPAVAAM EEEQAPVVAR LGFWLAARRR LAPDDPFFAA GNMERELLAK QVALDLSDDE  60
RYQLERMEVA STNTFFCPIS GCGAHLDCLE NFEDHYSTRH TASCSVCWRV YPTSRLLSIH  120
ISEAHDSFFQ AKVARGFPMY ECLVEGCGVK LKSYKSRQQH LVDKHQFPKS FEFFKKARPS  180
QRQRHKNQKQ RQTVHKGGEE TMETLMDVDG KGSRHMNRRY QPKQRHDVKE SKENEQHSCK  240
EPSNSEMEVD KQIDELSSAV SKLSTADSTP SSISFGHRRS RGLAFVPRSI RQNKQVSQAQ  300
PK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G21270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607020.0AK060702.1 Oryza sativa Japonica Group cDNA clone:001-030-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663466.10.0PREDICTED: zinc finger protein 511
TrEMBLJ3N8J10.0J3N8J1_ORYBR; Uncharacterized protein
STRINGOB11G21270.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.13e-92zinc ion binding;nucleic acid binding;zinc ion binding