PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G13180.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 503aa    MW: 53152.3 Da    PI: 6.3658
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G13180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-093333701954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  OB11G13180.1 333 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 370
                   664459******************************88 PP
2BELL117.75.6e-38193264172
          BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   erqelq+kk kL+++l+eV++rY+qy++q+q+v+ sFeavag gsa+ Yt+lAl++iSr+FrcL+daia q+
  OB11G13180.1 193 ERQELQMKKGKLINMLDEVEQRYRQYHQQMQVVVTSFEAVAGGGSARTYTALALRTISRQFRCLRDAIAAQV 264
                   79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.2E-60113262IPR006563POX domain
PfamPF075261.2E-50118261IPR006563POX domain
PROSITE profilePS5007112.228311374IPR001356Homeobox domain
CDDcd000862.12E-13314375No hitNo description
SMARTSM003891.2E-9314378IPR001356Homeobox domain
SuperFamilySSF466892.31E-17315381IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-29317380IPR009057Homeodomain-like
PfamPF059201.8E-18331370IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQSDTDGL QTLYLMNPSY AGYSDAAAAA AQPGAANMML LNSAVTSMTP  60
VSFGHQPSPS SAAQHFVGIP PQPQASGYNL WTSAATGADD MSPPSQQAPG GGAAAGQMVM  120
SSKYLKAAQE LLDEVVSVSK GVDDGKAAAA AKSPTSVKKK EDSEGVSGGG TEDGGGGAKR  180
SGAAPPPEMS TAERQELQMK KGKLINMLDE VEQRYRQYHQ QMQVVVTSFE AVAGGGSART  240
YTALALRTIS RQFRCLRDAI AAQVRAASRA LGEAEADGGG GGGRSMGSRL RYIDHQLRQQ  300
RALQQLGMMQ SSAWRPQRGL PERSVSILRA WLFEHFLHPY PKDSDKIMLA KQTGLTRSQV  360
SNWFINARVR LWKPMVEEMY LEETKDQEGA GDEGKPGGSK GSNAGVNGVV VDSAGKVENK  420
AARVAESGGG VHASLLELAG DHQAQPGFYE DDDEEDGGGG AAVLQQKLKK ARTAEEQQQQ  480
TAAFHKILAD PIIDGFSQIM STS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-17320377158Homeobox protein Meis1
4xrs_B3e-17320377158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G13180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663234.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-105BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLJ3N6820.0J3N682_ORYBR; Uncharacterized protein
STRINGOB11G13180.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.38e-77BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]