PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G13170.1
Common NameLOC102701663
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 901aa    MW: 97998.5 Da    PI: 6.6554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G13170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000747067431355
                   HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  OB11G13170.1 706 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 743
                   67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.9E-315160IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.525693742IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4706755IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MAVGEALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHTSFPAGSE ASEALPTDVG  60
CAADTMTMCS LVKKVMASQV HVVGEGTVGR AAFTGNHEWI IHGTAKDHGL PSEVAAEMSN  120
QFRVGIQTIA IIPVLPRGVL QLGSTRVVME NKSLMTHAKK LCSQLNNRSS MAVSSSVKTA  180
SNHQGRSRPS HGASNVQSTE NCSKKFSQFP VTYEQYSHPD TTAVSGSTSL NACMNASTLK  240
IAQLNGQAVR DHISYSKPDV RFIQQAYREG QLVSNAQSIA MSSDLISSSL ASGQKQPLFM  300
NNIGQLEFCD GADTSADLHR NALLKPLVCL DSFIHENRNI NISHGIAEVS NGINGHGNFD  360
YLLGGARLVR ANLSTSATSQ VLDQRNHSVS GMLLHRQPLV SCELPQSSEL SAKMGSLERG  420
SFQIPSALSS ESDFQISNGL NANISQENQF SVSNHICQDQ NINRVNDLSA TLSTQKMNNM  480
DGCRPPSLSV GKTSPLFVEQ SVENDLFDIL GPQFHHLCHN VGADLVPWTD AKPESSDRDV  540
PESSIHVDSS LLFSSRDNEL YSGMFSLTDS DQLLDAVISN VNPAGKQSSD DSASCKTSLT  600
DIPGTSYLSS KEMKQCGSSG IPSALIKHES GQFIKQPCLT ENAEDGCLSQ NNGMHKSQIR  660
LWIESGKNMK CESASASNSK GLDTPNKSNR KRSRPGESPR PRPKDRQLIQ DRIKELREMV  720
PNGAKCSIDA LLEKTVKHML FLQSVTKHAD KLKDSTESKI LGSENGPVWK DYFEGGATWA  780
FDVGSQSMTC PIIVEDLDRP HQMLVEMICE DRGIFLEIAD FIKGLGLTIL RGAMEARKSK  840
IWARFTVEAN RNVTRMEIFL SLVRLLEPNC DSTGAADNAN NVNMPLGLVR QPVIPATGRI  900
Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G13170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332170.0AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662753.20.0PREDICTED: transcription factor LHW-like
TrEMBLJ3N6810.0J3N681_ORYBR; Uncharacterized protein
STRINGOB11G13170.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.19e-44conserved peptide upstream open reading frame 7