PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G12920.1
Common NameLOC102699438
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 274aa    MW: 30692.1 Da    PI: 7.1577
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G12920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.82.5e-2937127187
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                   f+k ltpsdv+k++rlv+pk++ae++    g    ++  l+lede g  W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ 
  OB11G12920.1  37 FEKPLTPSDVGKLNRLVIPKQHAERYfplaGDAADKGLILSLEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVYFERVRG 127
                   99***************************9666678899************************************************7642 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-4031145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-2934128IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-2836129No hitNo description
PfamPF023621.7E-2637127IPR003340B3 DNA binding domain
SMARTSM010191.9E-2237142IPR003340B3 DNA binding domain
PROSITE profilePS5086313.43737142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAMNPLFSQE HPQAWPWGVA MYASFHYHHH YEKEHMFEKP LTPSDVGKLN RLVIPKQHAE  60
RYFPLAGDAA DKGLILSLED EAGAPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV  120
YFERVRGSFG VGDRLFIGCR RRGDAAQTPA PPAVRVVPAA QNAGEQQPWS PMCYSTSGSY  180
PTSPANSYAY RRVGEHDHGD MHHAEESPRD TESRSPSFSA GSAPSRRLRL FGVNLDCGPE  240
PEADATEATA MYGYMHQQSS FAAMSAVPSY WGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-50321423113B3 domain-containing transcription factor NGA1
5os9_B2e-50321423113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G12920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704870.0AK070487.1 Oryza sativa Japonica Group cDNA clone:J023049E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662746.10.0PREDICTED: B3 domain-containing protein Os11g0156000
SwissprotQ53QI01e-167Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLJ3N6560.0J3N656_ORYBR; Uncharacterized protein
STRINGOB11G12920.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.22e-53B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]