PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB11G11210.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 283aa MW: 31431.5 Da PI: 6.2402

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB11G11210.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.9	1.2e-50	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 lppGfrFhPtdeel+v+yL +++++ +++ +i+ev+iyk++PwdLp+k+ +ekewyfFs+rd+ky++g r+nra+ gyWkatg+dk++l++ + OB11G11210.1 6 LPPGFRFHPTDEELIVHYLMNQAASMACPV-PIIAEVNIYKCNPWDLPAKALFGEKEWYFFSPRDRKYPNGARPNRAAGPGYWKATGTDKAILATpT 101 79**************************.88***********8878899**********************************9988 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +kk Lvfykg+ pkg ktdW+mheyrl OB11G11210.1 102 SHSIAVKKALVFYKGKPPKGLKTDWIMHEYRL 133 999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-61	2	168	IPR003441	NAC domain
PROSITE profile	PS51005	57.01	6	168	IPR003441	NAC domain
Pfam	PF02365	2.6E-25	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MAMPALPPGF RFHPTDEELI VHYLMNQAAS MACPVPIIAE VNIYKCNPWD LPAKALFGEK 60 EWYFFSPRDR KYPNGARPNR AAGPGYWKAT GTDKAILATP TSHSIAVKKA LVFYKGKPPK 120 GLKTDWIMHE YRLTPASPAN CNTPKQRRGS SSMTMRLDDW VLCRIHKKSN DFSSSDQQEE 180 QDQPEGSTVE QQEDNNSCSE LAPTSEHNEQ PSFQPMAASS MSKSCSLTDL LNTIDCAALS 240 QLLLDGSSDM VSEPPAPPSP LIYTNPCQTQ TVLTYNMNNN NNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-73	6	174	15	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB11G11210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU167547	0.0	KU167547.1 Oryza sativa cultivar Moctuyen transcription factor (NAC10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006662692.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	A0SPJ6	4e-83	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	J3N5N5	0.0	J3N5N5_ORYBR; Uncharacterized protein
STRING	OB11G11210.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-82	NAC domain containing protein 47

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]