PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB11G10760.1 | ||||||||
Common Name | LOC102713776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 316aa MW: 35378.3 Da PI: 6.4989 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 57.6 | 2.5e-18 | 148 | 214 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS........STTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae........dpkvveitYegeHnh 58 Dg++WrKYGqK++++s++prsYYrCt++ +C+++k v++ ++ p + +++Y g+H++ OB11G10760.1 148 DGHQWRKYGQKHINNSKHPRSYYRCTYRqeeKCKATKTVQQREDlnyanngdHPIMYTMVYYGQHTC 214 9**************************99999*******9876222222221355677889999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-21 | 141 | 215 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-19 | 142 | 215 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-29 | 146 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-22 | 148 | 214 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.584 | 148 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MMKSSSSSKK RSLVADQHPS SVCCDHLAAL REISRGQSLV TQLRAIVLPV LQADERCGIA 60 AQMLEDILDC SRKAMSQLQP LLLSSSDSAH DHVDDKRRVR KISSSSDDDD DHCSSKAAQD 120 HDAKPLRQHK RRRFGDSVSL ETPVPHYDGH QWRKYGQKHI NNSKHPRSYY RCTYRQEEKC 180 KATKTVQQRE DLNYANNGDH PIMYTMVYYG QHTCCKSPAA DDHVVVEASQ NSTETHCQSP 240 SSSSDQQPVA HAGDRSQCSN ISVTCSSSAI VEDCNKLLDM LPAADELTTD VLFDLTAYAP 300 LDLDINWEMD ANALWV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-13 | 148 | 214 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB11G10760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK289175 | 0.0 | AK289175.1 Oryza sativa Japonica Group cDNA, clone: J100021A14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006663160.1 | 0.0 | PREDICTED: probable WRKY transcription factor 70 | ||||
TrEMBL | J3N5J0 | 0.0 | J3N5J0_ORYBR; Uncharacterized protein | ||||
STRING | OB11G10760.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 4e-17 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Entrez Gene | 102713776 |