PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G25310.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 361aa    MW: 40083.1 Da    PI: 10.526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G25310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.7e-16182227555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  OB10G25310.1 182 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 227
                   *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-18175236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.025177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-20180249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-18182231No hitNo description
PfamPF000107.3E-14182227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEAVPAVRTA RRWRQWWARR PRGCRRRRRS TSRDPWPRRR RGSASAXXXX XXXXXXXXXX  60
XXXXXXXXXX XXACASQGSA VPGRGESALL TLDACGTAAD DVCGFTTTTN NSTSLDRTED  120
KGSPETENTS IAGGVSDSRC FSRPSQSQRG GMCDEEEHVV IKGDGVMRSS ISTKRSRAAA  180
IHNESERKRR DRINQKMKTL QKLVPNSSKT DKASMLDEVI DYLKQLQAQV QVMSRMGSMM  240
MPMGMAMPQL QMSVMAQMAQ MAQIGLSMMN MGQAGGYAGL TPPMMHTAPF LPVSWDAAAD  300
RPPPQPTGAA TPDAFSAFLA CQQSSQQPNG MEAYNRMMAM YQKLNQQQMH MQQDQPSNSR  360
Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12640RRRSTSRDPWPRRRR
2185190ERKRRD
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G25310.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879250.0AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697075.10.0PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ383e-42UNE10_ARATH; Transcription factor UNE10
TrEMBLJ3N4T30.0J3N4T3_ORYBR; Uncharacterized protein
STRINGOB10G25310.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-39bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]