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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OB10G18940.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
ERF |
Protein Properties |
Length: 220aa MW: 24333.2 Da PI: 5.8933 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OB10G18940.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 62.8 | 7.5e-20 | 11 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr ++ +g+++AeIrdp + +r++lg+f+taeeAa+a+++a+ + +g
OB10G18940.1 11 TKYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAYAQRG 62
69********.**********8333..4***********************9998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MEGDRSKDAA TKYRGVRKRP WGKFAAEIRD PERGGARVWL GTFDTAEEAA RAYDRAAYAQ 60 RGAAAVLNFP AAAAAAGSSS SSSSAQGGGR PGASRGEKIE FEYLDDKLLD DLLDDEKYRA 120 SIWYPGCSFV HYLYMARRDG KGIQEPKAKG PLKGDDKFSS LQVEGKWVMF IEPIPTQNDI 180 VFFQIQDSKG VVEGMFLTTD NPMYTTTYST DDKMNLVQTH
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC025907 | 5e-81 | AC025907.2 Oryza sativa Japonica Group cultivar japonica chromosome 10 clone nbxb0094K20, complete sequence. |
GenBank | AP014966 | 5e-81 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
GenBank | CP012618 | 5e-81 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |