PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G15940.1
Common NameLOC102701108
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 541aa    MW: 60113.7 Da    PI: 5.98
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G15940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.17.1e-1311715401373
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++++++c +av+++d++l++ l+++l +++s +gdp+qRl ay++e+L arl++s+s lyk+l+++e +   sse +++++l++e++P++kf+++ 
  OB10G15940.1 171 LKQVIIACGKAVAENDARLTELLISELGQMVSVSGDPLQRLGAYMLEGLVARLSSSGSMLYKSLKCKEPT---SSELMSYMHLLYEICPFYKFGYMS 264
                   57899****************************************************************9...9*********************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp lRiTg+++++s   +   l  +g rL k+A+++g+pfef++ v  + ++++le
  OB10G15940.1 265 ANGAIAEAIKGENFVHIIDFQIAQGSQWITLIQALAARPGGPPYLRITGIDDSNSAyaRGGGLDIVGMRLYKVAQSCGLPFEFSA-VPAASHEVHLE 360
                   ****************************************************988899999************************.7999******* PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +++++ gE+++Vn+++qlh+++desvs+e++rd++++++kslsP+vv++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++ r++ E+++
  OB10G15940.1 361 HIDIRVGEVIVVNFAYQLHHTPDESVSTENHRDRIIRMIKSLSPRVVTLVEQELNTNTRPFFPRYLETLDYYTAMFESIDVALPRDDKRRMNAEQQC 457
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   ++r+ivn++acegaer+erhe ++kW++r+++aGF+p+pls+ +++++k+ll++++s  yr+ee++g l+lgWk+r Lv+ SaW
  OB10G15940.1 458 VARDIVNLIACEGAERVERHEMFGKWKARFTMAGFRPYPLSSVVNNTIKTLLHTYNSF-YRLEERDGVLYLGWKNRVLVVSSAW 540
                   ********************************************************65.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.77145522IPR005202Transcription factor GRAS
PfamPF035142.5E-128171540IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MSARASNHAY ICSDDSQMPY YNNSVSSGEN GRFYVTQNHQ DVHYASSDDG SQRIGSSPQT  60
FEPQYCTLES SSANGAHPAH SSASSHSISP ISGSPLSHHD SHSDHTYSSP PSASCLTEIT  120
DLQIKLKELE NAILGPELDI AYDSPESSLQ PNTMATPENW RQLLGINTGD LKQVIIACGK  180
AVAENDARLT ELLISELGQM VSVSGDPLQR LGAYMLEGLV ARLSSSGSML YKSLKCKEPT  240
SSELMSYMHL LYEICPFYKF GYMSANGAIA EAIKGENFVH IIDFQIAQGS QWITLIQALA  300
ARPGGPPYLR ITGIDDSNSA YARGGGLDIV GMRLYKVAQS CGLPFEFSAV PAASHEVHLE  360
HIDIRVGEVI VVNFAYQLHH TPDESVSTEN HRDRIIRMIK SLSPRVVTLV EQELNTNTRP  420
FFPRYLETLD YYTAMFESID VALPRDDKRR MNAEQQCVAR DIVNLIACEG AERVERHEMF  480
GKWKARFTMA GFRPYPLSSV VNNTIKTLLH TYNSFYRLEE RDGVLYLGWK NRVLVVSSAW  540
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-581735406374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G15940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133350.0AC113335.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661722.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_015697462.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLJ3N2460.0J3N246_ORYBR; Uncharacterized protein
STRINGOB10G15940.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]