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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB10G12550.1 | ||||||||
Common Name | LOC102714771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 251aa MW: 28950.8 Da PI: 6.9494 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.8 | 8.4e-32 | 21 | 78 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s +prsYYrCt + C vkk+vers++d ++v++tYeg+H+h+ OB10G12550.1 21 EDGYRWRKYGQKAVKNSSYPRSYYRCTAPWCGVKKRVERSQQDASMVITTYEGQHTHP 78 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 2.35E-27 | 16 | 80 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-37 | 20 | 79 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.5E-30 | 20 | 80 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.6E-26 | 21 | 78 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.564 | 21 | 80 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MTAAGGECSF PLPLWSLYAC EDGYRWRKYG QKAVKNSSYP RSYYRCTAPW CGVKKRVERS 60 QQDASMVITT YEGQHTHPSP VSYHVHRHHA AGLMAAAGFA TPPPPLLRFC MPRRRRPRLP 120 RGDDEPTADE LRRAQHTVRR PADDDDEPTA DELRRAQHTV RRPADDDDEP TADELRRAQH 180 TVRRPADDDD EPTADELRRA QHTVRRPADD DDEPTADELR RAQHTVRRPA DDDDASSSIC 240 YEWRTRSKEH Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-23 | 19 | 80 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB10G12550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109568 | 2e-83 | AK109568.1 Oryza sativa Japonica Group cDNA clone:002-130-E04, full insert sequence. | |||
GenBank | AY870600 | 2e-83 | AY870600.1 Oryza sativa (japonica cultivar-group) WRKY8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662206.1 | 0.0 | PREDICTED: probable WRKY transcription factor 27 | ||||
TrEMBL | J3N157 | 0.0 | J3N157_ORYBR; Uncharacterized protein | ||||
STRING | OB10G12550.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 4e-30 | WRKY DNA-binding protein 48 |
Link Out ? help Back to Top | |
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Entrez Gene | 102714771 |