PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB09G23520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 70aa MW: 7534.53 Da PI: 10.9894 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.4e-19 | 26 | 70 | 2 | 50 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaar 50 ++ GVr+++ +grWvAeI+d +r r +lg+f+taeeAa+a+++a+ OB09G23520.1 26 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAA 70 689******.7*********....4456********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-17 | 26 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-22 | 26 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.558 | 26 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-14 | 26 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-9 | 27 | 38 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-16 | 27 | 70 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.46E-17 | 32 | 70 | No hit | No description |
PRINTS | PR00367 | 6.8E-9 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MAAQESGKVV VAGGAAAAKA CRGRRRFVGV RQRPSGRWVA EIKDSAQRVR LWLGTFDTAE 60 EAARAYDEAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB09G23520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ810282 | 1e-114 | DQ810282.1 Oryza brachyantha BAC 0002C07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661124.1 | 2e-26 | dehydration-responsive element-binding protein 2B | ||||
Swissprot | Q6J9S1 | 3e-23 | RA211_ARATH; Ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | A6MCZ9 | 1e-39 | A6MCZ9_ORYBR; AP2 domain-containing protein | ||||
TrEMBL | J3MZC3 | 2e-40 | J3MZC3_ORYBR; Uncharacterized protein | ||||
STRING | OB09G23520.1 | 3e-41 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-10 | related to AP2 11 |
Publications ? help Back to Top | |||
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