PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G22630.1
Common NameLOC102704550
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 282aa    MW: 31020.6 Da    PI: 6.9625
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G22630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09120167455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  OB09G22630.1 120 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 167
                   8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.58E-11114171No hitNo description
SuperFamilySSF474592.49E-17114183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-17116180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-7120167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAGFSHLPQQ MEHGLITNGF LFCHGHGAST TASAAIHEDA SMETSSVVLD HTSPQGTASV  60
DKKRKPREED SASLNSAHSK EAKESSRKRG GKKHNRDQME DDAPQGFIHV RARRGQATDS  120
HSLAERVRRE RISERMRMLQ ALVPGCDKVT GKALILDEII NYVQSLQNQV EFLSMRIASL  180
SPVLYGFGID SDAFSDHSQK IEGMFHEAAA IPASVLNRAS PAQSQSIMDT SNTSRPTPYS  240
LQVQGGNSQS QDNGSYIMQT VGEPRQELFN QVVLNNYMCS FQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G22630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661880.0AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660828.10.0PREDICTED: transcription factor bHLH76-like
TrEMBLJ3MZ340.0J3MZ34_ORYBR; Uncharacterized protein
STRINGOB09G22630.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-39bHLH family protein